RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	NDST4	Q9H3R1	872 aa		12.06	□□□□□ -0.48
CPNE1-222	ENST00000473373	SYNC	Q9H7C4	482 aa		12.06	□□□□□ -0.48
CPNE1-222	ENST00000473373	ANO10	Q9NW15	660 aa		12.06	□□□□□ -0.48
CPNE1-222	ENST00000473373	PLK2	Q9NYY3	685 aa		12.06	□□□□□ -0.48
CPNE1-222	ENST00000473373	SFMBT1	Q9UHJ3	866 aa		12.06	□□□□□ -0.48
CPNE1-222	ENST00000473373	USP18	Q9UMW8	372 aa		12.06	□□□□□ -0.48
CPNE1-222	ENST00000473373	NFE2L3	Q9Y4A8	694 aa		12.06	□□□□□ -0.48
CPNE1-222	ENST00000473373	NUP205	Q92621	2012 aa		12.06	□□□□□ -0.48
CPNE1-222	ENST00000473373	SDK1	Q7Z5N4	2213 aa		12.06	□□□□□ -0.48
CPNE1-222	ENST00000473373	GTPBP10	A4D1E9	387 aa	Known RBP	12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	YJEFN3	A6XGL0	299 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373		E7ENQ6	273 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	AXIN1	O15169	862 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	HOXC11	O43248	304 aa	Predicted RBP	12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	SART1	O43290	800 aa	Known RBP	12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	TULP3	O75386	442 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	RPP40	O75818	363 aa	Known RBP	12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	APBB3	O95704	486 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	LTF	P02788	710 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	NCAM1	P13591	858 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	CDK11B	P21127	795 aa	Known RBP	12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	PON1	P27169	355 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	GBP1	P32455	592 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	KRT9	P35527	623 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	DGKG	P49619	791 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	ATXN1	P54253	815 aa	Known RBP	12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	DAOA	P59103	153 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	MRPS21	P82921	87 aa	Known RBP	12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	DMWD	Q09019	674 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	SRSF5	Q13243	272 aa	Known RBP	12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	STX1A	Q16623	288 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	CT47A1	Q5JQC4	288 aa	Predicted RBP	12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	EOGT	Q5NDL2	527 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	FKBP15	Q5T1M5	1219 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	CCDC183	Q5T5S1	534 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	ANO7	Q6IWH7	933 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	PMF1	Q6P1K2	205 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	SYT13	Q7L8C5	426 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	TRMT11	Q7Z4G4	463 aa	Known RBP	12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	WDR5B	Q86VZ2	330 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	CAMKK1	Q8N5S9	505 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	ALLC	Q8N6M5	410 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	ZNF513	Q8N8E2	541 aa	Predicted RBP	12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	TXNDC5	Q8NBS9	432 aa	Known RBP	12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	GPT2	Q8TD30	523 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	DDI1	Q8WTU0	396 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	HSFY1	Q96LI6	401 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	NOX5	Q96PH1	765 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	TRIM62	Q9BVG3	475 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	LSM14B	Q9BX40	385 aa	Known RBP	12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	EPC1	Q9H2F5	836 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	POLM	Q9NP87	494 aa	Predicted RBP	12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	ZDHHC4	Q9NPG8	344 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	SAMSN1	Q9NSI8	373 aa	Known RBP	12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	C2orf42	Q9NWW7	574 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	TAB2	Q9NYJ8	693 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	DNAJC12	Q9UKB3	198 aa		12.05	□□□□□ -0.48
CPNE1-222	ENST00000473373	TYW5	A2RUC4	315 aa	Known RBP	12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373		K7EQS6	105 aa		12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373		K7ESF4	209 aa		12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	LILRB5	O75023	590 aa		12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	PAPSS2	O95340	614 aa	Predicted RBP	12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	EEF1G	P26641	437 aa	Known RBP	12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	TNFRSF4	P43489	277 aa		12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	SNX16	P57768	344 aa		12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	APBA1	Q02410	837 aa		12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	TCP11X2	Q5H9J9	407 aa		12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	PM20D1	Q6GTS8	502 aa		12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	LAIR1	Q6GTX8	287 aa		12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	PASD1	Q8IV76	773 aa		12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	CCDC117	Q8IWD4	279 aa	Predicted RBP	12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	ZNF276	Q8N554	614 aa		12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	TERB1	Q8NA31	727 aa		12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	IPO4	Q8TEX9	1081 aa	Known RBP	12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	USP33	Q8TEY7	942 aa		12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	SLC35F5	Q8WV83	523 aa		12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	UCMA	Q8WVF2	138 aa		12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	ZNF606	Q8WXB4	792 aa		12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	IRGQ	Q8WZA9	623 aa		12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	TPSD1	Q9BZJ3	242 aa		12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	VPS16	Q9H269	839 aa		12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	POLR3B	Q9NW08	1133 aa	Predicted RBP	12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	MMP17	Q9ULZ9	603 aa		12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	HBS1L	Q9Y450	684 aa	Known RBP	12.04	□□□□□ -0.48
CPNE1-222	ENST00000473373	NCOR2	Q9Y618	2525 aa		12.03	□□□□□ -0.48
CPNE1-222	ENST00000473373	DCDC2B	A2VCK2	349 aa		12.03	□□□□□ -0.48
CPNE1-222	ENST00000473373	MSI1	O43347	362 aa	Known RBP	12.03	□□□□□ -0.48
CPNE1-222	ENST00000473373	TSPAN3	O60637	253 aa		12.03	□□□□□ -0.48
CPNE1-222	ENST00000473373	WAS	P42768	502 aa		12.03	□□□□□ -0.48
CPNE1-222	ENST00000473373	ZNF132	P52740	706 aa		12.03	□□□□□ -0.48
CPNE1-222	ENST00000473373	TBX4	P57082	545 aa		12.03	□□□□□ -0.48
CPNE1-222	ENST00000473373	BPIFB4	P59827	614 aa		12.03	□□□□□ -0.48
CPNE1-222	ENST00000473373	ELF2	Q15723	593 aa		12.03	□□□□□ -0.48
CPNE1-222	ENST00000473373	HSF5	Q4G112	596 aa	Predicted RBP	12.03	□□□□□ -0.48
CPNE1-222	ENST00000473373	PKDCC	Q504Y2	493 aa		12.03	□□□□□ -0.48
CPNE1-222	ENST00000473373	USP39	Q53GS9	565 aa	Known RBP	12.03	□□□□□ -0.48
CPNE1-222	ENST00000473373	DENND1B	Q6P3S1	775 aa		12.03	□□□□□ -0.48
CPNE1-222	ENST00000473373	IRF2BP1	Q8IU81	584 aa		12.03	□□□□□ -0.48
CPNE1-222	ENST00000473373	UNC45B	Q8IWX7	931 aa		12.03	□□□□□ -0.48
CPNE1-222	ENST00000473373	SCUBE3	Q8IX30	993 aa		12.03	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 41 ms