RNA–Protein interactions for RNA: ENST00000469207.5

HDAC3-204, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-204ENST00000469207 PLXND1Q9Y4D7 1925 aa12.91□□□□□ -0.34
HDAC3-204ENST00000469207 SRRM3A6NNA2 597 aaPredicted RBP12.9□□□□□ -0.34
HDAC3-204ENST00000469207 KCNJ18B7U540 433 aa12.9□□□□□ -0.34
HDAC3-204ENST00000469207 SH3BP5O60239 455 aa12.9□□□□□ -0.34
HDAC3-204ENST00000469207 OPHN1O60890 802 aa12.9□□□□□ -0.34
HDAC3-204ENST00000469207 CILPO75339 1184 aa12.9□□□□□ -0.34
HDAC3-204ENST00000469207 NR2F2P24468 414 aa12.9□□□□□ -0.34
HDAC3-204ENST00000469207 IL12RB1P42701 662 aa12.9□□□□□ -0.34
HDAC3-204ENST00000469207 INCA1Q0VD86 236 aa12.9□□□□□ -0.34
HDAC3-204ENST00000469207 EFEMP1Q12805 493 aa12.9□□□□□ -0.34
HDAC3-204ENST00000469207 FUT11Q495W5 492 aa12.9□□□□□ -0.34
HDAC3-204ENST00000469207 FYB2Q5VWT5 728 aa12.9□□□□□ -0.34
HDAC3-204ENST00000469207 HDDC3Q8N4P3 179 aa12.9□□□□□ -0.34
HDAC3-204ENST00000469207 PNPLA1Q8N8W4 532 aa12.9□□□□□ -0.34
HDAC3-204ENST00000469207 CEP76Q8TAP6 659 aa12.9□□□□□ -0.34
HDAC3-204ENST00000469207 SORCS1Q8WY21 1168 aa12.9□□□□□ -0.34
HDAC3-204ENST00000469207 SEMA4DQ92854 862 aa12.9□□□□□ -0.34
HDAC3-204ENST00000469207 SNX21Q969T3 373 aa12.9□□□□□ -0.34
HDAC3-204ENST00000469207 HEXIM2Q96MH2 286 aaKnown RBP12.9□□□□□ -0.34
HDAC3-204ENST00000469207 DUSP16Q9BY84 665 aa12.9□□□□□ -0.34
HDAC3-204ENST00000469207 MKRN2Q9H000 416 aaKnown RBP12.9□□□□□ -0.34
HDAC3-204ENST00000469207 RASAL2Q9UJF2 1139 aa12.9□□□□□ -0.34
HDAC3-204ENST00000469207 CFAP45Q9UL16 551 aa12.9□□□□□ -0.34
HDAC3-204ENST00000469207 FRMD4BQ9Y2L6 1034 aa12.9□□□□□ -0.34
HDAC3-204ENST00000469207 USP3Q9Y6I4 520 aa12.9□□□□□ -0.34
HDAC3-204ENST00000469207 PCDH15Q96QU1 1955 aa12.89□□□□□ -0.35
HDAC3-204ENST00000469207 TAF4O00268 1085 aa12.89□□□□□ -0.35
HDAC3-204ENST00000469207 ZBTB24O43167 697 aaPredicted RBP12.89□□□□□ -0.35
HDAC3-204ENST00000469207 CALUO43852 315 aaPredicted RBP12.89□□□□□ -0.35
HDAC3-204ENST00000469207 NDUFS2O75306 463 aa12.89□□□□□ -0.35
HDAC3-204ENST00000469207 ZNF217O75362 1048 aa12.89□□□□□ -0.35
HDAC3-204ENST00000469207 MFAP3P55082 362 aa12.89□□□□□ -0.35
HDAC3-204ENST00000469207 GOLGA8FQ08AF8 430 aa12.89□□□□□ -0.35
HDAC3-204ENST00000469207 GOLGA8DPQ0D2H9 430 aa12.89□□□□□ -0.35
HDAC3-204ENST00000469207 PLEKHG6Q3KR16 790 aa12.89□□□□□ -0.35
HDAC3-204ENST00000469207 TMEM215Q68D42 235 aa12.89□□□□□ -0.35
HDAC3-204ENST00000469207 CACUL1Q86Y37 369 aa12.89□□□□□ -0.35
HDAC3-204ENST00000469207 DENND1CQ8IV53 801 aa12.89□□□□□ -0.35
HDAC3-204ENST00000469207 TATDN2Q93075 761 aa12.89□□□□□ -0.35
HDAC3-204ENST00000469207 TOE1Q96GM8 510 aaKnown RBP12.89□□□□□ -0.35
HDAC3-204ENST00000469207 GPR174Q9BXC1 333 aa12.89□□□□□ -0.35
HDAC3-204ENST00000469207 WSB2Q9NYS7 404 aaPredicted RBP12.89□□□□□ -0.35
HDAC3-204ENST00000469207 AGO1Q9UL18 857 aaKnown RBP12.89□□□□□ -0.35
HDAC3-204ENST00000469207 TRAF3IP3Q9Y228 551 aa12.89□□□□□ -0.35
HDAC3-204ENST00000469207 HPSEQ9Y251 543 aa12.89□□□□□ -0.35
HDAC3-204ENST00000469207 PCDHA5Q9Y5H7 936 aa12.89□□□□□ -0.35
HDAC3-204ENST00000469207 CACNA1GO43497 2377 aa12.88□□□□□ -0.35
HDAC3-204ENST00000469207 IGF2RP11717 2491 aa12.88□□□□□ -0.35
HDAC3-204ENST00000469207 A0A1W2PQD8 194 aa12.88□□□□□ -0.35
HDAC3-204ENST00000469207 UPK3BL1B0FP48 263 aa12.88□□□□□ -0.35
HDAC3-204ENST00000469207 UPK3BL2E5RIL1 263 aa12.88□□□□□ -0.35
HDAC3-204ENST00000469207 TULP2O00295 520 aa12.88□□□□□ -0.35
HDAC3-204ENST00000469207 GJB3O75712 270 aa12.88□□□□□ -0.35
HDAC3-204ENST00000469207 HSP90AA1P07900 732 aaKnown RBP12.88□□□□□ -0.35
HDAC3-204ENST00000469207 CMA1P23946 247 aa12.88□□□□□ -0.35
HDAC3-204ENST00000469207 CD6P30203 668 aa12.88□□□□□ -0.35
HDAC3-204ENST00000469207 CORO1AP31146 461 aaKnown RBP12.88□□□□□ -0.35
HDAC3-204ENST00000469207 HOXD12P35452 270 aa12.88□□□□□ -0.35
HDAC3-204ENST00000469207 NDUFA8P51970 172 aa12.88□□□□□ -0.35
HDAC3-204ENST00000469207 ADAM9Q13443 819 aa12.88□□□□□ -0.35
HDAC3-204ENST00000469207 KLHDC10Q6PID8 442 aa12.88□□□□□ -0.35
HDAC3-204ENST00000469207 CCDC186Q7Z3E2 898 aa12.88□□□□□ -0.35
HDAC3-204ENST00000469207 FAM186BQ8IYM0 893 aa12.88□□□□□ -0.35
HDAC3-204ENST00000469207 SLC4A11Q8NBS3 891 aa12.88□□□□□ -0.35
HDAC3-204ENST00000469207 ZCCHC14Q8WYQ9 949 aaKnown RBP12.88□□□□□ -0.35
HDAC3-204ENST00000469207 ARID3AQ99856 593 aa12.88□□□□□ -0.35
HDAC3-204ENST00000469207 PRDM16Q9HAZ2 1276 aa12.88□□□□□ -0.35
HDAC3-204ENST00000469207 CYP3A43Q9HB55 503 aa12.88□□□□□ -0.35
HDAC3-204ENST00000469207 IL21RQ9HBE5 538 aa12.88□□□□□ -0.35
HDAC3-204ENST00000469207 ITM2CQ9NQX7 267 aa12.88□□□□□ -0.35
HDAC3-204ENST00000469207 THAP10Q9P2Z0 257 aaPredicted RBP12.88□□□□□ -0.35
HDAC3-204ENST00000469207 MSRB2Q9Y3D2 182 aa12.88□□□□□ -0.35
HDAC3-204ENST00000469207 NEUROG3Q9Y4Z2 214 aa12.88□□□□□ -0.35
HDAC3-204ENST00000469207 SLCO1B1Q9Y6L6 691 aa12.88□□□□□ -0.35
HDAC3-204ENST00000469207 DMXL2Q8TDJ6 3036 aa12.87□□□□□ -0.35
HDAC3-204ENST00000469207 SLC12A8A0AV02 714 aa12.87□□□□□ -0.35
HDAC3-204ENST00000469207 GFRA2O00451 464 aa12.87□□□□□ -0.35
HDAC3-204ENST00000469207 TSPAN3O60637 253 aa12.87□□□□□ -0.35
HDAC3-204ENST00000469207 PENKP01210 267 aaPredicted RBP12.87□□□□□ -0.35
HDAC3-204ENST00000469207 SYPP08247 313 aa12.87□□□□□ -0.35
HDAC3-204ENST00000469207 RALAP11233 206 aa12.87□□□□□ -0.35
HDAC3-204ENST00000469207 DPP6P42658 865 aa12.87□□□□□ -0.35
HDAC3-204ENST00000469207 TPMTP51580 245 aa12.87□□□□□ -0.35
HDAC3-204ENST00000469207 RAD23BP54727 409 aa12.87□□□□□ -0.35
HDAC3-204ENST00000469207 DPYDQ12882 1025 aa12.87□□□□□ -0.35
HDAC3-204ENST00000469207 TRIP6Q15654 476 aaKnown RBP12.87□□□□□ -0.35
HDAC3-204ENST00000469207 ATL3Q6DD88 541 aa12.87□□□□□ -0.35
HDAC3-204ENST00000469207 INTS8Q75QN2 995 aaKnown RBP12.87□□□□□ -0.35
HDAC3-204ENST00000469207 PIGZQ86VD9 579 aa12.87□□□□□ -0.35
HDAC3-204ENST00000469207 TMPRSS6Q8IU80 811 aa12.87□□□□□ -0.35
HDAC3-204ENST00000469207 SMYD4Q8IYR2 804 aaPredicted RBP12.87□□□□□ -0.35
HDAC3-204ENST00000469207 PIWIL1Q96J94 861 aaKnown RBP12.87□□□□□ -0.35
HDAC3-204ENST00000469207 IMPG2Q9BZV3 1241 aa12.87□□□□□ -0.35
HDAC3-204ENST00000469207 NIF3L1Q9GZT8 377 aa12.87□□□□□ -0.35
HDAC3-204ENST00000469207 MIR1-1HGQ9H1L0 117 aa12.87□□□□□ -0.35
HDAC3-204ENST00000469207 DNAAF2Q9NVR5 837 aaKnown RBP12.87□□□□□ -0.35
HDAC3-204ENST00000469207 CLIC5Q9NZA1 410 aa12.87□□□□□ -0.35
HDAC3-204ENST00000469207 ZDHHC9Q9Y397 364 aa12.87□□□□□ -0.35
HDAC3-204ENST00000469207 MAPK13O15264 365 aa12.86□□□□□ -0.35
HDAC3-204ENST00000469207 RHOBTB3O94955 611 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms