RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 HTATIP2Q9BUP3 242 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 SPAG4Q9NPE6 437 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 OVOS2A0A0J9YW53 1432 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 OVOS2Q6IE36 1432 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 C1orf232A0A0U1RR37 186 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 GRTP1Q5TC63 336 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 TMC3Q7Z5M5 1100 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 CABLES1Q8TDN4 633 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 RIT1Q92963 219 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 CYP3A43Q9HB55 503 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 CROTQ9UKG9 612 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 RPN2P04844 631 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 GYPCP04921 128 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 RBP3P10745 1247 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 USP10Q14694 798 aaKnown RBP7.38□□□□□ -1.23
VPS53-204ENST00000437048 ZSCAN2Q7Z7L9 614 aaPredicted RBP7.38□□□□□ -1.23
VPS53-204ENST00000437048 TMEM132CQ8N3T6 1108 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 TOP1MTQ969P6 601 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 SYNPO2Q9UMS6 1093 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 NMT2O60551 498 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 RAPGEF3O95398 923 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 SERPINA6P08185 405 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 NFKB1P19838 968 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 LRPAP1P30533 357 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 VBP1P61758 197 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 ST3GAL1Q11201 340 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 BLMHQ13867 455 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 ERMARDQ5T6L9 678 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 ZNF605Q86T29 641 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 MAB21L3Q8N8X9 362 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 FLCNQ8NFG4 579 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 GDPD5Q8WTR4 605 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 TATDN2Q93075 761 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 ZKSCAN4Q969J2 545 aaPredicted RBP7.38□□□□□ -1.23
VPS53-204ENST00000437048 FAM118BQ9BPY3 351 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 TRPM5Q9NZQ8 1165 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 TRIM10Q9UDY6 481 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 GLS2Q9UI32 602 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 GDAQ9Y2T3 454 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 PCDHGA10Q9Y5H3 936 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 ALG6Q9Y672 507 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 MAP2P11137 1827 aaKnown RBP7.38□□□□□ -1.23
VPS53-204ENST00000437048 hCG_2014768A0A024R1R8 64 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 CCDC189A1A4V9 331 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 CDK18Q07002 472 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 CYP51A1Q16850 503 aa7.38□□□□□ -1.23
VPS53-204ENST00000437048 ASTN2O75129 1339 aaPredicted RBP7.37□□□□□ -1.23
VPS53-204ENST00000437048 KCNN4O15554 427 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 CHST10O43529 356 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 PRMT3O60678 531 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 EIF3MQ7L2H7 374 aaKnown RBP7.37□□□□□ -1.23
VPS53-204ENST00000437048 NMRAL1Q9HBL8 299 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 TRIM49BA6NDI0 452 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 TRIM49D1C9J1S8 452 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 ACTR3P61158 418 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 RASSF6Q6ZTQ3 369 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 STRBPQ96SI9 672 aaKnown RBP7.37□□□□□ -1.23
VPS53-204ENST00000437048 HOPXQ9BPY8 73 aaPredicted RBP7.37□□□□□ -1.23
VPS53-204ENST00000437048 EHD3Q9NZN3 535 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 PKD2L1Q9P0L9 805 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 NINQ8N4C6 2090 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 PSMD12O00232 456 aaPredicted RBP7.37□□□□□ -1.23
VPS53-204ENST00000437048 HPCAL1P37235 193 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 SPANXN3Q5MJ09 141 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 TMEM26Q6ZUK4 368 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 TMEM110Q86TL2 294 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 GPALPP1Q8IXQ4 340 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 NSUN6Q8TEA1 469 aaKnown RBP7.37□□□□□ -1.23
VPS53-204ENST00000437048 DPF3Q92784 378 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 PSMD11O00231 422 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 FGFR4P22455 802 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 CA8P35219 290 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 EXOSC10Q01780 885 aaKnown RBP7.37□□□□□ -1.23
VPS53-204ENST00000437048 CHI3L2Q15782 390 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 CHRNA2Q15822 529 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 METTL16Q86W50 562 aaKnown RBP7.37□□□□□ -1.23
VPS53-204ENST00000437048 NUP93Q8N1F7 819 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 PIWIL2Q8TC59 973 aaKnown RBP7.37□□□□□ -1.23
VPS53-204ENST00000437048 HES6Q96HZ4 224 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 CPNE1Q99829 537 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 RAD18Q9NS91 495 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 HOXC10Q9NYD6 342 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 HEY1Q9Y5J3 304 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 SHOX2O60902 331 aaPredicted RBP7.37□□□□□ -1.23
VPS53-204ENST00000437048 SIN3BO75182 1162 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 PDK4Q16654 411 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 CXXC5Q7LFL8 322 aaKnown RBP7.37□□□□□ -1.23
VPS53-204ENST00000437048 TJP2Q9UDY2 1190 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 PCDHB6Q9Y5E3 794 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 A0A088AWK7 358 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 ZNF10P21506 573 aaPredicted RBP7.37□□□□□ -1.23
VPS53-204ENST00000437048 RORAP35398 523 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 MAPK8P45983 427 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 MGAT5Q09328 741 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 MPP3Q13368 585 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 FBXO31Q5XUX0 539 aaPredicted RBP7.37□□□□□ -1.23
VPS53-204ENST00000437048 DENND5AQ6IQ26 1287 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 ZNF420Q8TAQ5 688 aaPredicted RBP7.37□□□□□ -1.23
VPS53-204ENST00000437048 MKS1Q9NXB0 559 aa7.37□□□□□ -1.23
VPS53-204ENST00000437048 A0A087X1B8 175 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms