RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 TKTL1P51854 596 aa17.92■□□□□ 0.46
TRIM39-209ENST00000428728 YWHAGP61981 247 aaKnown RBP eCLIP17.92■□□□□ 0.46
TRIM39-209ENST00000428728 IRX4P78413 519 aa17.92■□□□□ 0.46
TRIM39-209ENST00000428728 RPL6Q02878 288 aaKnown RBP17.92■□□□□ 0.46
TRIM39-209ENST00000428728 LRMPQ12912 555 aa17.92■□□□□ 0.46
TRIM39-209ENST00000428728 CUL2Q13617 745 aa17.92■□□□□ 0.46
TRIM39-209ENST00000428728 BECN1Q14457 450 aa17.92■□□□□ 0.46
TRIM39-209ENST00000428728 COBLL1Q53SF7 1204 aa17.92■□□□□ 0.46
TRIM39-209ENST00000428728 TRIM61Q5EBN2 209 aa17.92■□□□□ 0.46
TRIM39-209ENST00000428728 ISM2Q6H9L7 571 aa17.92■□□□□ 0.46
TRIM39-209ENST00000428728 SDE2Q6IQ49 451 aa17.92■□□□□ 0.46
TRIM39-209ENST00000428728 PSAPL1Q6NUJ1 521 aa17.92■□□□□ 0.46
TRIM39-209ENST00000428728 KIAA1211LQ6NV74 962 aa17.92■□□□□ 0.46
TRIM39-209ENST00000428728 ARHGAP18Q8N392 663 aa17.92■□□□□ 0.46
TRIM39-209ENST00000428728 DEFB119Q8N690 84 aa17.92■□□□□ 0.46
TRIM39-209ENST00000428728 ANKRD52Q8NB46 1076 aa17.92■□□□□ 0.46
TRIM39-209ENST00000428728 ENGASEQ8NFI3 743 aa17.92■□□□□ 0.46
TRIM39-209ENST00000428728 P2RY11Q96G91 374 aa17.92■□□□□ 0.46
TRIM39-209ENST00000428728 ULBP1Q9BZM6 244 aa17.92■□□□□ 0.46
TRIM39-209ENST00000428728 MARCH2Q9P0N8 246 aa17.92■□□□□ 0.46
TRIM39-209ENST00000428728 ARMCX3Q9UH62 379 aaPredicted RBP17.92■□□□□ 0.46
TRIM39-209ENST00000428728 TSPAN16Q9UKR8 245 aa17.92■□□□□ 0.46
TRIM39-209ENST00000428728 STRIP2Q9ULQ0 834 aa17.92■□□□□ 0.46
TRIM39-209ENST00000428728 PCDH15Q96QU1 1955 aa17.91■□□□□ 0.46
TRIM39-209ENST00000428728 SLC12A8A0AV02 714 aa17.91■□□□□ 0.46
TRIM39-209ENST00000428728 KCNK5O95279 499 aa17.91■□□□□ 0.46
TRIM39-209ENST00000428728 NDUFV2P19404 249 aa17.91■□□□□ 0.46
TRIM39-209ENST00000428728 NOVA1P51513 510 aaKnown RBP17.91■□□□□ 0.46
TRIM39-209ENST00000428728 BCAT1P54687 386 aa17.91■□□□□ 0.46
TRIM39-209ENST00000428728 COG7P83436 770 aa17.91■□□□□ 0.46
TRIM39-209ENST00000428728 LRRC63Q05C16 580 aa17.91■□□□□ 0.46
TRIM39-209ENST00000428728 PDE4CQ08493 712 aa17.91■□□□□ 0.46
TRIM39-209ENST00000428728 ADIGQ0VDE8 80 aa17.91■□□□□ 0.46
TRIM39-209ENST00000428728 SGO2Q562F6 1265 aa17.91■□□□□ 0.46
TRIM39-209ENST00000428728 RAB41Q5JT25 222 aa17.91■□□□□ 0.46
TRIM39-209ENST00000428728 DAB2IPQ5VWQ8 1189 aa17.91■□□□□ 0.46
TRIM39-209ENST00000428728 LYSMD4Q5XG99 296 aa17.91■□□□□ 0.46
TRIM39-209ENST00000428728 DENND1CQ8IV53 801 aa17.91■□□□□ 0.46
TRIM39-209ENST00000428728 ZNF276Q8N554 614 aa17.91■□□□□ 0.46
TRIM39-209ENST00000428728 IPO4Q8TEX9 1081 aaKnown RBP17.91■□□□□ 0.46
TRIM39-209ENST00000428728 NDRG1Q92597 394 aaKnown RBP17.91■□□□□ 0.46
TRIM39-209ENST00000428728 SLC35C1Q96A29 364 aa17.91■□□□□ 0.46
TRIM39-209ENST00000428728 SLC6A17Q9H1V8 727 aa17.91■□□□□ 0.46
TRIM39-209ENST00000428728 FAM124BQ9H5Z6 455 aaPredicted RBP17.91■□□□□ 0.46
TRIM39-209ENST00000428728 HESX1Q9UBX0 185 aa17.91■□□□□ 0.46
TRIM39-209ENST00000428728 CYP8B1Q9UNU6 501 aa17.91■□□□□ 0.46
TRIM39-209ENST00000428728 ZNF510Q9Y2H8 683 aa17.91■□□□□ 0.46
TRIM39-209ENST00000428728 COQ4Q9Y3A0 265 aa17.91■□□□□ 0.46
TRIM39-209ENST00000428728 MAP1BP46821 2468 aaKnown RBP17.9■□□□□ 0.46
TRIM39-209ENST00000428728 MUC22E2RYF6 1773 aaPredicted RBP17.9■□□□□ 0.46
TRIM39-209ENST00000428728 XPO1O14980 1071 aaKnown RBP17.9■□□□□ 0.46
TRIM39-209ENST00000428728 ZBTB24O43167 697 aaPredicted RBP17.9■□□□□ 0.46
TRIM39-209ENST00000428728 ZBED1O96006 694 aa17.9■□□□□ 0.46
TRIM39-209ENST00000428728 CISD3P0C7P0 127 aa17.9■□□□□ 0.46
TRIM39-209ENST00000428728 ITPKAP23677 461 aa17.9■□□□□ 0.46
TRIM39-209ENST00000428728 YWHAEP62258 255 aaKnown RBP17.9■□□□□ 0.46
TRIM39-209ENST00000428728 BST2Q10589 180 aaKnown RBP17.9■□□□□ 0.46
TRIM39-209ENST00000428728 UAP1L1Q3KQV9 507 aa17.9■□□□□ 0.46
TRIM39-209ENST00000428728 FYB2Q5VWT5 728 aa17.9■□□□□ 0.46
TRIM39-209ENST00000428728 SYT12Q8IV01 421 aa17.9■□□□□ 0.46
TRIM39-209ENST00000428728 SPATA20Q8TB22 786 aa17.9■□□□□ 0.46
TRIM39-209ENST00000428728 NUSAP1Q9BXS6 441 aaKnown RBP17.9■□□□□ 0.46
TRIM39-209ENST00000428728 DCLK3Q9C098 648 aa17.9■□□□□ 0.46
TRIM39-209ENST00000428728 LRRC4Q9HBW1 653 aa17.9■□□□□ 0.46
TRIM39-209ENST00000428728 CD93Q9NPY3 652 aa17.9■□□□□ 0.46
TRIM39-209ENST00000428728 TMEM74BQ9NUR3 256 aa17.9■□□□□ 0.46
TRIM39-209ENST00000428728 HOOK1Q9UJC3 728 aaKnown RBP17.9■□□□□ 0.46
TRIM39-209ENST00000428728 ACACBO00763 2458 aa17.9■□□□□ 0.46
TRIM39-209ENST00000428728 CACNA1BQ00975 2339 aa17.89■□□□□ 0.46
TRIM39-209ENST00000428728 WASH3PC4AMC7 463 aa17.89■□□□□ 0.45
TRIM39-209ENST00000428728 PSMA7O14818 248 aa17.89■□□□□ 0.45
TRIM39-209ENST00000428728 GIPC1O14908 333 aa17.89■□□□□ 0.45
TRIM39-209ENST00000428728 AP5Z1O43299 807 aa17.89■□□□□ 0.45
TRIM39-209ENST00000428728 PENKP01210 267 aaPredicted RBP17.89■□□□□ 0.45
TRIM39-209ENST00000428728 CFIP05156 583 aa17.89■□□□□ 0.45
TRIM39-209ENST00000428728 PMLP29590 882 aa17.89■□□□□ 0.45
TRIM39-209ENST00000428728 CHKAP35790 457 aa17.89■□□□□ 0.45
TRIM39-209ENST00000428728 MAPK8P45983 427 aa17.89■□□□□ 0.45
TRIM39-209ENST00000428728 MFAP3P55082 362 aa17.89■□□□□ 0.45
TRIM39-209ENST00000428728 NUCB2P80303 420 aa17.89■□□□□ 0.45
TRIM39-209ENST00000428728 STIM1Q13586 685 aa17.89■□□□□ 0.45
TRIM39-209ENST00000428728 KLHL10Q6JEL2 608 aa17.89■□□□□ 0.45
TRIM39-209ENST00000428728 KIAA1324Q6UXG2 1013 aaKnown RBP17.89■□□□□ 0.45
TRIM39-209ENST00000428728 SLC36A4Q6YBV0 504 aa17.89■□□□□ 0.45
TRIM39-209ENST00000428728 UBA3Q8TBC4 463 aa17.89■□□□□ 0.45
TRIM39-209ENST00000428728 GABRG3Q99928 467 aa17.89■□□□□ 0.45
TRIM39-209ENST00000428728 UBXN6Q9BZV1 441 aa17.89■□□□□ 0.45
TRIM39-209ENST00000428728 CD248Q9HCU0 757 aa17.89■□□□□ 0.45
TRIM39-209ENST00000428728 EVLQ9UI08 416 aaPredicted RBP17.89■□□□□ 0.45
TRIM39-209ENST00000428728 ANGPTL2Q9UKU9 493 aa17.89■□□□□ 0.45
TRIM39-209ENST00000428728 AGO1Q9UL18 857 aaKnown RBP17.89■□□□□ 0.45
TRIM39-209ENST00000428728 NYNRINQ9P2P1 1898 aaKnown RBP17.88■□□□□ 0.45
TRIM39-209ENST00000428728 IGHV1OR15-9A0A0B4J2B8 117 aa17.88■□□□□ 0.45
TRIM39-209ENST00000428728 CDX4O14627 284 aaPredicted RBP17.88■□□□□ 0.45
TRIM39-209ENST00000428728 CYBBP04839 570 aa17.88■□□□□ 0.45
TRIM39-209ENST00000428728 CD44P16070 742 aaKnown RBP17.88■□□□□ 0.45
TRIM39-209ENST00000428728 TBXAS1P24557 533 aaPredicted RBP17.88■□□□□ 0.45
TRIM39-209ENST00000428728 FMO5P49326 533 aa17.88■□□□□ 0.45
TRIM39-209ENST00000428728 GEN1Q17RS7 908 aa17.88■□□□□ 0.45
TRIM39-209ENST00000428728 CCDC40Q4G0X9 1142 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms