RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 MIER2Q8N344 545 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 NECAB1Q8N987 351 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 B3GALNT2Q8NCR0 500 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 STAG1Q8WVM7 1258 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 ESR2Q92731 530 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 TNPO1Q92973 898 aaKnown RBP4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 GTF3C6Q969F1 213 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 PDLIM2Q96JY6 352 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 SMOQ99835 787 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 RIOK1Q9BRS2 568 aaKnown RBP4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 UBAC1Q9BSL1 405 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 BRD9Q9H8M2 597 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 DBNDD1Q9H9R9 158 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 CPNE5Q9HCH3 593 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 CTTNBP2NLQ9P2B4 639 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 NEU2Q9Y3R4 380 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 NR2E3Q9Y5X4 410 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 CFAP20Q9Y6A4 193 aaKnown RBP4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 FAM205AQ6ZU69 1335 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 MYH4Q9Y623 1939 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 DICER1Q9UPY3 1922 aaKnown RBP4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 SIPA1L1O43166 1804 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 ATAD5Q96QE3 1844 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 SNED1Q8TER0 1413 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 ROBO3Q96MS0 1386 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 GAKO14976 1311 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 TNKSO95271 1327 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 MYO3BQ8WXR4 1341 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 ZNF785A8K8V0 405 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 H3BQV1 296 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 FZD9O00144 591 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 SH2B2O14492 632 aaPredicted RBP4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 IFIT3O14879 490 aaKnown RBP4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 STX6O43752 255 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 DHX16O60231 1041 aaKnown RBP4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 RANBP6O60518 1105 aaKnown RBP4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 PFKFB2O60825 505 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 GJB1P08034 283 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 DPEP1P16444 411 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 NCLP19338 710 aaKnown RBP4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 METAP2P50579 478 aaKnown RBP eCLIP4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 RBM5P52756 815 aaKnown RBP eCLIP4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 ADKP55263 362 aaKnown RBP4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 SNAPC2Q13487 334 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 SLC4A8Q2Y0W8 1093 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 CYB5R4Q7L1T6 521 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 MICU3Q86XE3 530 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 IQCA1Q86XH1 822 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 FAM98AQ8NCA5 519 aaKnown RBP4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 NSUN6Q8TEA1 469 aaKnown RBP4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 TEKT1Q969V4 418 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 TRIB1Q96RU8 372 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 RTFDC1Q9BY42 306 aaPredicted RBP4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 ZNF287Q9HBT7 754 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 ALG13Q9NP73 1137 aaKnown RBP4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 SEMA4GQ9NTN9 838 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 MCM9Q9NXL9 1143 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 PCDHA3Q9Y5H8 950 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 ATP6V1DQ9Y5K8 247 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 TCHHQ07283 1943 aa4.33□□□□□ -1.72
HMGB3P20-201ENST00000417997 FLT1P17948 1338 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 CYP2D7A0A087X1C5 515 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 GPR75-ASB3A0A0A6YYF3 556 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 LRRC3CA6NJW4 275 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 TSPY2A6NKD2 308 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 F2RL2O00254 374 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 ZBTB43O43298 467 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 SNUPNO95149 360 aaKnown RBP4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 BAG4O95429 457 aaKnown RBP4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 MATN4O95460 622 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 PPP3CBP16298 524 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 SYT1P21579 422 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 NPTX2P47972 431 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 NT5C2P49902 561 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 ZNF135P52742 658 aaPredicted RBP4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 MAPK10P53779 464 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 FKBP1AP62942 108 aaKnown RBP4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 EXOSC10Q01780 885 aaKnown RBP4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 ST3GAL1Q11201 340 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 PICALMQ13492 652 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 PKP1Q13835 747 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 SBK1Q52WX2 424 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 IFIT1BQ5T764 474 aaKnown RBP4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 TSTD2Q5T7W7 516 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 CTR9Q6PD62 1173 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 MICALCLQ6ZW33 695 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 GRASPQ7Z6J2 395 aaPredicted RBP4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 RAB11FIP4Q86YS3 637 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 MYCBPAPQ8TBZ2 947 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 ZNF274Q96GC6 653 aaPredicted RBP4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 PGBD1Q96JS3 809 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 DMRTA2Q96SC8 542 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 LLPHQ9BRT6 129 aaKnown RBP4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 AGXT2Q9BYV1 514 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 TMOD2Q9NZR1 351 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 CFAP97Q9P2B7 532 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 ANAPC4Q9UJX5 808 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 HDAC9Q9UKV0 1011 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 ST3GAL5Q9UNP4 418 aa4.32□□□□□ -1.72
HMGB3P20-201ENST00000417997 COL4A3BPQ9Y5P4 624 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 118 ms