RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 PHBP35232 272 aa15.41■□□□□ 0.06
USP4-203ENST00000415188 IRS1P35568 1242 aa15.41■□□□□ 0.06
USP4-203ENST00000415188 LTBRP36941 435 aa15.41■□□□□ 0.06
USP4-203ENST00000415188 ARL4CP56559 192 aa15.41■□□□□ 0.06
USP4-203ENST00000415188 CBLBQ13191 982 aa15.41■□□□□ 0.06
USP4-203ENST00000415188 KCTD6Q8NC69 237 aa15.41■□□□□ 0.06
USP4-203ENST00000415188 RSAD2Q8WXG1 361 aa15.41■□□□□ 0.06
USP4-203ENST00000415188 CCT6BQ92526 530 aa15.41■□□□□ 0.06
USP4-203ENST00000415188 MAML1Q92585 1016 aa15.41■□□□□ 0.06
USP4-203ENST00000415188 GRAMD1AQ96CP6 724 aa15.41■□□□□ 0.06
USP4-203ENST00000415188 CPB2Q96IY4 423 aa15.41■□□□□ 0.06
USP4-203ENST00000415188 MAGEB18Q96M61 343 aa15.41■□□□□ 0.06
USP4-203ENST00000415188 TSPAN18Q96SJ8 248 aa15.41■□□□□ 0.06
USP4-203ENST00000415188 IGFLR1Q9H665 355 aa15.41■□□□□ 0.06
USP4-203ENST00000415188 RAPGEFL1Q9UHV5 662 aa15.41■□□□□ 0.06
USP4-203ENST00000415188 SMG5Q9UPR3 1016 aaKnown RBP15.41■□□□□ 0.06
USP4-203ENST00000415188 PDCD11Q14690 1871 aaKnown RBP15.41■□□□□ 0.06
USP4-203ENST00000415188 GRXCR2A6NFK2 248 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 ZNF487B1APH4 448 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 MCF2LO15068 1137 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 LINC01565O15544 149 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 PRPF4O43172 522 aaKnown RBP eCLIP15.4■□□□□ 0.06
USP4-203ENST00000415188 CSDE1O75534 798 aaKnown RBP15.4■□□□□ 0.06
USP4-203ENST00000415188 DNAJC8O75937 253 aaPredicted RBP15.4■□□□□ 0.06
USP4-203ENST00000415188 ENDOD1O94919 500 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 OAS1P00973 400 aaKnown RBP15.4■□□□□ 0.06
USP4-203ENST00000415188 ZSCAN5DPP0CG00 497 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 NDST1P52848 882 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 FAM189BP81408 668 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 DLX2Q07687 328 aaPredicted RBP15.4■□□□□ 0.06
USP4-203ENST00000415188 HIF1AQ16665 826 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 SPOUT1Q5T280 376 aaKnown RBP15.4■□□□□ 0.06
USP4-203ENST00000415188 FAM102AQ5T9C2 384 aaPredicted RBP15.4■□□□□ 0.06
USP4-203ENST00000415188 RFX6Q8HWS3 928 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 ATP11CQ8NB49 1132 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 GLIS1Q8NBF1 620 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 POF1BQ8WVV4 589 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 TEKT4Q8WW24 435 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 PWWP2AQ96N64 755 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 TMEM121Q9BTD3 319 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 DNAI2Q9GZS0 605 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 SSU72Q9NP77 194 aaKnown RBP15.4■□□□□ 0.06
USP4-203ENST00000415188 KCNK9Q9NPC2 374 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 RNF19AQ9NV58 838 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 TMEM161AQ9NX61 479 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 HMGXB4Q9UGU5 601 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 USP18Q9UMW8 372 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 CFAP69A5D8W1 941 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 FAM47DPA6NHR8 397 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 C2CD4BA6NLJ0 364 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 E7ESA3 106 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 DARSP14868 501 aaKnown RBP15.4■□□□□ 0.06
USP4-203ENST00000415188 COL9A1P20849 921 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 STIP1P31948 543 aaKnown RBP15.4■□□□□ 0.06
USP4-203ENST00000415188 STX2P32856 288 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 IFNAR2P48551 515 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 PDK2Q15119 407 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 TMED2Q15363 201 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 CTC1Q2NKJ3 1217 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 ADGRD2Q7Z7M1 963 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 TRABD2AQ86V40 505 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 UNC93AQ86WB7 457 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 ZDHHC17Q8IUH5 632 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 LRRC52Q8N7C0 313 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 ACSF2Q96CM8 615 aaPredicted RBP15.4■□□□□ 0.06
USP4-203ENST00000415188 KIF12Q96FN5 646 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 TBCBQ99426 244 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 FRMD8Q9BZ67 464 aaPredicted RBP15.4■□□□□ 0.06
USP4-203ENST00000415188 CTNNAL1Q9UBT7 734 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 TJP2Q9UDY2 1190 aa15.4■□□□□ 0.06
USP4-203ENST00000415188 FNDC1Q4ZHG4 1894 aaPredicted RBP15.39■□□□□ 0.05
USP4-203ENST00000415188 RASA4BC9J798 803 aa15.39■□□□□ 0.05
USP4-203ENST00000415188 RASA4O43374 803 aa15.39■□□□□ 0.05
USP4-203ENST00000415188 SNX3O60493 162 aa15.39■□□□□ 0.05
USP4-203ENST00000415188 SUN1O94901 812 aa15.39■□□□□ 0.05
USP4-203ENST00000415188 IFNB1P01574 187 aa15.39■□□□□ 0.05
USP4-203ENST00000415188 ETS1P14921 441 aa15.39■□□□□ 0.05
USP4-203ENST00000415188 SCNN1AP37088 669 aa15.39■□□□□ 0.05
USP4-203ENST00000415188 EIF3EP60228 445 aaKnown RBP15.39■□□□□ 0.05
USP4-203ENST00000415188 IL9RQ01113 521 aa15.39■□□□□ 0.05
USP4-203ENST00000415188 PDIA2Q13087 525 aaKnown RBP15.39■□□□□ 0.05
USP4-203ENST00000415188 SMTNL2Q2TAL5 461 aa15.39■□□□□ 0.05
USP4-203ENST00000415188 KLHL38Q2WGJ6 581 aa15.39■□□□□ 0.05
USP4-203ENST00000415188 BOLA3Q53S33 107 aa15.39■□□□□ 0.05
USP4-203ENST00000415188 ZC3H12AQ5D1E8 599 aaKnown RBP15.39■□□□□ 0.05
USP4-203ENST00000415188 EFHC2Q5JST6 749 aa15.39■□□□□ 0.05
USP4-203ENST00000415188 FAM43BQ6ZT52 329 aaPredicted RBP15.39■□□□□ 0.05
USP4-203ENST00000415188 PRUNE1Q86TP1 453 aa15.39■□□□□ 0.05
USP4-203ENST00000415188 MAP7D3Q8IWC1 876 aa15.39■□□□□ 0.05
USP4-203ENST00000415188 SUGP1Q8IWZ8 645 aaKnown RBP15.39■□□□□ 0.05
USP4-203ENST00000415188 SRRM1Q8IYB3 904 aaKnown RBP15.39■□□□□ 0.05
USP4-203ENST00000415188 CYP4X1Q8N118 509 aa15.39■□□□□ 0.05
USP4-203ENST00000415188 EMC1Q8N766 993 aa15.39■□□□□ 0.05
USP4-203ENST00000415188 GBP7Q8N8V2 638 aaPredicted RBP15.39■□□□□ 0.05
USP4-203ENST00000415188 NAT8LQ8N9F0 302 aa15.39■□□□□ 0.05
USP4-203ENST00000415188 STK32AQ8WU08 396 aa15.39■□□□□ 0.05
USP4-203ENST00000415188 HAUS1Q96CS2 278 aa15.39■□□□□ 0.05
USP4-203ENST00000415188 ELAC2Q9BQ52 826 aaKnown RBP15.39■□□□□ 0.05
USP4-203ENST00000415188 MAK16Q9BXY0 300 aaKnown RBP15.39■□□□□ 0.05
USP4-203ENST00000415188 GCOM2Q9BZD3 368 aaPredicted RBP15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms