RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 ZNF670Q9BS34 389 aa6.92□□□□□ -1.3
VPS41-204ENST00000413141 HEMGNQ9BXL5 484 aa6.92□□□□□ -1.3
VPS41-204ENST00000413141 CALN1Q9BXU9 219 aa6.92□□□□□ -1.3
VPS41-204ENST00000413141 DDX47Q9H0S4 455 aaKnown RBP6.92□□□□□ -1.3
VPS41-204ENST00000413141 SLITRK6Q9H5Y7 841 aa6.92□□□□□ -1.3
VPS41-204ENST00000413141 ANKZF1Q9H8Y5 726 aa6.92□□□□□ -1.3
VPS41-204ENST00000413141 PCDH18Q9HCL0 1135 aa6.92□□□□□ -1.3
VPS41-204ENST00000413141 ALG13Q9NP73 1137 aaKnown RBP6.92□□□□□ -1.3
VPS41-204ENST00000413141 TLR9Q9NR96 1032 aa6.92□□□□□ -1.3
VPS41-204ENST00000413141 TLR8Q9NR97 1041 aaKnown RBP6.92□□□□□ -1.3
VPS41-204ENST00000413141 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.92□□□□□ -1.3
VPS41-204ENST00000413141 GPATCH2LQ9NWQ4 482 aa6.92□□□□□ -1.3
VPS41-204ENST00000413141 DDIT4Q9NX09 232 aa6.92□□□□□ -1.3
VPS41-204ENST00000413141 CLIC5Q9NZA1 410 aa6.92□□□□□ -1.3
VPS41-204ENST00000413141 COX16Q9P0S2 106 aa6.92□□□□□ -1.3
VPS41-204ENST00000413141 FBXW11Q9UKB1 542 aa6.92□□□□□ -1.3
VPS41-204ENST00000413141 MTUS1Q9ULD2 1270 aa6.92□□□□□ -1.3
VPS41-204ENST00000413141 FZD10Q9ULW2 581 aa6.92□□□□□ -1.3
VPS41-204ENST00000413141 EFR3BQ9Y2G0 817 aa6.92□□□□□ -1.3
VPS41-204ENST00000413141 YBX2Q9Y2T7 364 aaKnown RBP6.92□□□□□ -1.3
VPS41-204ENST00000413141 PCDHA11Q9Y5I1 949 aa6.92□□□□□ -1.3
VPS41-204ENST00000413141 ATG2AQ2TAZ0 1938 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 ZNF638Q14966 1978 aaKnown RBP6.91□□□□□ -1.3
VPS41-204ENST00000413141 TARSL2A2RTX5 802 aaKnown RBP6.91□□□□□ -1.3
VPS41-204ENST00000413141 HIDE1A8MVS5 230 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 I6L893 689 aaPredicted RBP6.91□□□□□ -1.3
VPS41-204ENST00000413141 PRRG1O14668 218 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 GRM6O15303 877 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 MSI1O43347 362 aaKnown RBP6.91□□□□□ -1.3
VPS41-204ENST00000413141 RAD51CO43502 376 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 GALR2O43603 387 aaPredicted RBP6.91□□□□□ -1.3
VPS41-204ENST00000413141 TJP3O95049 919 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 CXCL14O95715 111 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 F9P00740 461 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 RB1P06400 928 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 CSH1P0DML2 217 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 CSH2P0DML3 217 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 RARGP13631 454 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 HMGA1P17096 107 aaKnown RBP6.91□□□□□ -1.3
VPS41-204ENST00000413141 CHRNA3P32297 505 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 GBP1P32455 592 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 ELF1P32519 619 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 ALDH1A3P47895 512 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 FNTAP49354 379 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 CXCR3P49682 368 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 PSEN1P49768 467 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 TWF1Q12792 350 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 PLD1Q13393 1074 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 VEPH1Q14D04 833 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 GLE1Q53GS7 698 aaKnown RBP6.91□□□□□ -1.3
VPS41-204ENST00000413141 EFHC2Q5JST6 749 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 KAZNQ674X7 775 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 CCDC70Q6NSX1 233 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 TTC27Q6P3X3 843 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 BBS12Q6ZW61 710 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 SND1Q7KZF4 910 aaKnown RBP eCLIP6.91□□□□□ -1.3
VPS41-204ENST00000413141 RFX6Q8HWS3 928 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 MAP7D3Q8IWC1 876 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 TNS4Q8IZW8 715 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 GPR161Q8N6U8 529 aaKnown RBP6.91□□□□□ -1.3
VPS41-204ENST00000413141 PDZD8Q8NEN9 1154 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 RNF139Q8WU17 664 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 ATG4AQ8WYN0 398 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 OVCA2Q8WZ82 227 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 CASP10Q92851 521 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 FAF2Q96CS3 445 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 MYRFLQ96LU7 910 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 SERPINB11Q96P15 392 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 TGS1Q96RS0 853 aaKnown RBP6.91□□□□□ -1.3
VPS41-204ENST00000413141 KCTD15Q96SI1 283 aaPredicted RBP6.91□□□□□ -1.3
VPS41-204ENST00000413141 PNKPQ96T60 521 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 GDF15Q99988 308 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 LRRC1Q9BTT6 524 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 EMILIN2Q9BXX0 1053 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 UBE2OQ9C0C9 1292 aaKnown RBP6.91□□□□□ -1.3
VPS41-204ENST00000413141 EPC1Q9H2F5 836 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 DHX35Q9H5Z1 703 aaKnown RBP6.91□□□□□ -1.3
VPS41-204ENST00000413141 ANLNQ9NQW6 1124 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 TMPRSS4Q9NRS4 437 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 OLA1Q9NTK5 396 aaKnown RBP6.91□□□□□ -1.3
VPS41-204ENST00000413141 MTPAPQ9NVV4 582 aaKnown RBP eCLIP6.91□□□□□ -1.3
VPS41-204ENST00000413141 MTMR10Q9NXD2 777 aa6.91□□□□□ -1.3
VPS41-204ENST00000413141 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.91□□□□□ -1.3
VPS41-204ENST00000413141 MAGED2Q9UNF1 606 aaPredicted RBP6.91□□□□□ -1.3
VPS41-204ENST00000413141 R3HDM2Q9Y2K5 976 aaKnown RBP6.91□□□□□ -1.3
VPS41-204ENST00000413141 OBSL1O75147 1896 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 H3BNC9 293 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 APOC4-APOC2K7ER74 178 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 DYNC1I1O14576 645 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 TLR5O60602 858 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 CST8O60676 142 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 HEXIM1O94992 359 aaKnown RBP6.9□□□□□ -1.3
VPS41-204ENST00000413141 GLUD1P00367 558 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 APOC2P02655 101 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 C8AP07357 584 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 IL4RP24394 825 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 KLRC2P26717 231 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 L1CAMP32004 1257 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 ADRA1BP35368 520 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 IRS1P35568 1242 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms