RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 SPPL2AQ8TCT8 520 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 CKAP2Q8WWK9 683 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 DLG3Q92796 817 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 PHF21BQ96EK2 531 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 SRPK1Q96SB4 655 aaKnown RBP12.16□□□□□ -0.46
SYNPO-202ENST00000394243 UGT2B28Q9BY64 529 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 TAF6LQ9Y6J9 622 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 ASXL2Q76L83 1435 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 SLC25A3Q00325 362 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 FOLH1Q04609 750 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 ZNF846Q147U1 533 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 BOLA3Q53S33 107 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 SLC45A4Q5BKX6 768 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 BROXQ5VW32 411 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 RNF43Q68DV7 783 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 CASP12Q6UXS9 341 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 CYP4Z2PQ8N1L4 340 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 FBXW8Q8N3Y1 598 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 PGM2Q96G03 612 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 MYL12BO14950 172 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 TSPAN19P0C672 248 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 VAV1P15498 845 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 CBX3Q13185 183 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 RNF220Q5VTB9 566 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 ZNF605Q86T29 641 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.16□□□□□ -0.46
SYNPO-202ENST00000394243 BLOC1S5Q8TDH9 187 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 S100ZQ8WXG8 99 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 JMJD4Q9H9V9 463 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 VTI1BQ9UEU0 232 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 CCDC154A6NI56 674 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 MYL12AP19105 171 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 CCNIQ14094 377 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 QPRTQ15274 297 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 SAMD4BQ5PRF9 694 aaKnown RBP12.16□□□□□ -0.46
SYNPO-202ENST00000394243 TAF8Q7Z7C8 310 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 SUN5Q8TC36 379 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 APBB2Q92870 758 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 SPATA33Q96N06 139 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 PRRG3Q9BZD7 231 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 KCND2Q9NZV8 630 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 CDK12Q9NYV4 1490 aaPredicted RBP12.16□□□□□ -0.46
SYNPO-202ENST00000394243 CPB1P15086 417 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 SKIV2L2P42285 1042 aaKnown RBP12.16□□□□□ -0.46
SYNPO-202ENST00000394243 MPP3Q13368 585 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 ARHGAP27Q6ZUM4 889 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 DHDDSQ86SQ9 333 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 CAMK1DQ8IU85 385 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 YIPF2Q9BWQ6 316 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 MUC3BQ9H195 1237 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 CAPN10Q9HC96 672 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 JPH1Q9HDC5 661 aaPredicted RBP12.16□□□□□ -0.46
SYNPO-202ENST00000394243 FAM220BPB1ANY3 271 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 SLC26A4O43511 780 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 RBP1P09455 135 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 DBTP11182 482 aaKnown RBP12.16□□□□□ -0.46
SYNPO-202ENST00000394243 SPIDRQ14159 915 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 ZIK1Q3SY52 487 aaPredicted RBP12.16□□□□□ -0.46
SYNPO-202ENST00000394243 SPIRE2Q8WWL2 714 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 SLC5A5Q92911 643 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 DYRK4Q9NR20 520 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 MINPP1Q9UNW1 487 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 UBXN8O00124 270 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 MPOP05164 745 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 CYP19A1P11511 503 aaPredicted RBP12.15□□□□□ -0.46
SYNPO-202ENST00000394243 ADRA1DP25100 572 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 EPS8Q12929 822 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 GRAPQ13588 217 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 MYBPC2Q14324 1141 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 NR6A1Q15406 480 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 ERMARDQ5T6L9 678 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 MRNIPQ6NTE8 343 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 TTI2Q6NXR4 508 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 SPOCD1Q6ZMY3 1216 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 ITFG1Q8TB96 612 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 GRAPLQ8TC17 118 aaPredicted RBP12.15□□□□□ -0.46
SYNPO-202ENST00000394243 BORCS5Q969J3 196 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 NACC2Q96BF6 587 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 NAT9Q9BTE0 207 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 COA1Q9GZY4 146 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 DMTF1Q9Y222 760 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 PNPLA7Q6ZV29 1317 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 ATP7BP35670 1465 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 A0A1W2PRG6 482 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 DGAT1O75907 488 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 AKAP5P24588 427 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 MAPK1P28482 360 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 ACADSBP45954 432 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 CASP4P49662 377 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 ANTXR2P58335 489 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 PTPAQ15257 358 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 HIST2H2ACQ16777 129 aaPredicted RBP12.15□□□□□ -0.46
SYNPO-202ENST00000394243 HIST2H2AA3Q6FI13 130 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 FASTKD5Q7L8L6 764 aaKnown RBP12.15□□□□□ -0.46
SYNPO-202ENST00000394243 ELMOD1Q8N336 334 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 AMER2Q8N7J2 671 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 EXD1Q8NHP7 514 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 URGCPQ8TCY9 931 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 APOL2Q9BQE5 337 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 KCNK4Q9NYG8 393 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms