RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 MTRRQ9UBK8 725 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.94□□□□□ -0.34
CIITA-202ENST00000381835 PATJQ8NI35 1801 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 MTMR11A4FU01 709 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 YJEFN3A6XGL0 299 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 E7ENQ6 273 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 LRCH4O75427 683 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 SOAT2O75908 522 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 RNF8O76064 485 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 FGF18O76093 207 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 ZBED1O96006 694 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 SHBGP04278 402 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 DAOAP59103 153 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 ROR1Q01973 937 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 LLGL1Q15334 1064 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 CCDC14Q49A88 953 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 RAB6CQ53S08 254 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 HFE2Q6ZVN8 426 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 DDX53Q86TM3 631 aaKnown RBP12.94□□□□□ -0.34
CIITA-202ENST00000381835 CCDC50Q8IVM0 306 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 ARFGAP1Q8N6T3 406 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 GIMAP7Q8NHV1 300 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 PHOSPHO2Q8TCD6 241 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 CENPTQ96BT3 561 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 SGSM3Q96HU1 749 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 SELENOSQ9BQE4 189 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 CNPY3Q9BT09 278 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 FAM129AQ9BZQ8 928 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 RAB6CQ9H0N0 254 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 KDM4CQ9H3R0 1056 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 NGRNQ9NPE2 291 aaKnown RBP12.94□□□□□ -0.34
CIITA-202ENST00000381835 CNGB3Q9NQW8 809 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 PCSK1NQ9UHG2 260 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 TLDC2A0PJX2 215 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 WDR27A2RRH5 827 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 CARNS1A5YM72 827 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 FAM187AA6NFU0 413 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 FBXO21O94952 628 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 URODP06132 367 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 LINC00271P0C7V0 271 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 PYGMP11217 842 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 CA8P35219 290 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 SCNN1AP37088 669 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 SLC5A3P53794 718 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 PLTPP55058 493 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 YWHAZP63104 245 aaKnown RBP12.93□□□□□ -0.34
CIITA-202ENST00000381835 DSG1Q02413 1049 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 KRT17Q04695 432 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 DUSP4Q13115 394 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 MGAT5BQ3V5L5 792 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 ATP13A4Q4VNC1 1196 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 C9orf50Q5SZB4 431 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 DENND2CQ68D51 928 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 SLC8B1Q6J4K2 584 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 VSTM1Q6UX27 236 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 SPPL2BQ8TCT7 592 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 GPR152Q8TDT2 470 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 CCT6BQ92526 530 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 SEPT5Q99719 369 aaPredicted RBP12.93□□□□□ -0.34
CIITA-202ENST00000381835 HERC2P3Q9BVR0 1158 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 OXCT2Q9BYC2 517 aaPredicted RBP12.93□□□□□ -0.34
CIITA-202ENST00000381835 CRISPLD1Q9H336 500 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 PABPC3Q9H361 631 aaKnown RBP12.93□□□□□ -0.34
CIITA-202ENST00000381835 ZWILCHQ9H900 591 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 PNPLA8Q9NP80 782 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 ZDHHC18Q9NUE0 388 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 KLHL11Q9NVR0 708 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 ZNF638Q14966 1978 aaKnown RBP12.93□□□□□ -0.34
CIITA-202ENST00000381835 CHD7Q9P2D1 2997 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 PSTPIP1O43586 416 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 VNN2O95498 520 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 NUDT17P0C025 328 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 CHN1P15882 459 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 TFE3P19532 575 aaPredicted RBP12.93□□□□□ -0.34
CIITA-202ENST00000381835 DHX34Q14147 1143 aaKnown RBP12.93□□□□□ -0.34
CIITA-202ENST00000381835 CLUL1Q15846 466 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 SMTNL2Q2TAL5 461 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 PREPLQ4J6C6 727 aaPredicted RBP12.93□□□□□ -0.34
CIITA-202ENST00000381835 DCAF6Q58WW2 860 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 TXNRD3NBQ6F5E7 133 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 DEFB106AQ8N104 65 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 KLHL23Q8NBE8 558 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 CCDC197Q8NCU1 140 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 CLP1Q92989 425 aaKnown RBP12.93□□□□□ -0.34
CIITA-202ENST00000381835 CLSTN3Q9BQT9 956 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 TACO1Q9BSH4 297 aaKnown RBP12.93□□□□□ -0.34
CIITA-202ENST00000381835 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.93□□□□□ -0.34
CIITA-202ENST00000381835 RASAL2Q9UJF2 1139 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 SNX24Q9Y343 169 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 BACE2Q9Y5Z0 518 aa12.93□□□□□ -0.34
CIITA-202ENST00000381835 MYO7AQ13402 2215 aa12.92□□□□□ -0.34
CIITA-202ENST00000381835 PLXNA4Q9HCM2 1894 aa12.92□□□□□ -0.34
CIITA-202ENST00000381835 MYO16Q9Y6X6 1858 aa12.92□□□□□ -0.34
CIITA-202ENST00000381835 SMIM23A6NLE4 172 aa12.92□□□□□ -0.34
CIITA-202ENST00000381835 CAPN9O14815 690 aa12.92□□□□□ -0.34
CIITA-202ENST00000381835 CSPG5O95196 566 aa12.92□□□□□ -0.34
CIITA-202ENST00000381835 DESP17661 470 aa12.92□□□□□ -0.34
CIITA-202ENST00000381835 MIPP30301 263 aa12.92□□□□□ -0.34
CIITA-202ENST00000381835 ACAP1Q15027 740 aa12.92□□□□□ -0.34
CIITA-202ENST00000381835 KCNT1Q5JUK3 1230 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms