RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 HERVK_113P62684 666 aa5.09□□□□□ -1.6
PCDH9-201ENST00000377861 ZNF829Q3KNS6 432 aaPredicted RBP5.09□□□□□ -1.6
PCDH9-201ENST00000377861 C6orf52Q5T4I8 152 aa5.09□□□□□ -1.6
PCDH9-201ENST00000377861 CACHD1Q5VU97 1274 aa5.09□□□□□ -1.6
PCDH9-201ENST00000377861 PLGRKTQ9HBL7 147 aa5.09□□□□□ -1.6
PCDH9-201ENST00000377861 RAB6BQ9NRW1 208 aa5.09□□□□□ -1.6
PCDH9-201ENST00000377861 INPP5FQ9Y2H2 1132 aa5.09□□□□□ -1.6
PCDH9-201ENST00000377861 HDAC11Q96DB2 347 aa5.09□□□□□ -1.6
PCDH9-201ENST00000377861 BBS9Q3SYG4 887 aa5.09□□□□□ -1.6
PCDH9-201ENST00000377861 BICRALQ6AI39 1079 aa5.09□□□□□ -1.6
PCDH9-201ENST00000377861 QRFPRQ96P65 431 aa5.09□□□□□ -1.6
PCDH9-201ENST00000377861 C12orf65Q9H3J6 166 aaKnown RBP5.09□□□□□ -1.6
PCDH9-201ENST00000377861 VCLP18206 1134 aa5.09□□□□□ -1.6
PCDH9-201ENST00000377861 TLE6Q9H808 572 aa5.09□□□□□ -1.6
PCDH9-201ENST00000377861 NRKQ7Z2Y5 1582 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 KIF28PB7ZC32 967 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 SEMA3DO95025 777 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 BFSP2Q13515 415 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 GEN1Q17RS7 908 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 C16orf87Q6PH81 154 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 ZDHHC13Q8IUH4 622 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 CABLES1Q8TDN4 633 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 LENG9Q96B70 501 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 STYXL1Q9Y6J8 313 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 SLC39A3Q9BRY0 314 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 A0A0B4J269 797 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 TMEM191CA6NGB0 347 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 AQP12BA6NM10 295 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 GRK3P35626 688 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 AQP12AQ8IXF9 295 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 COPG1Q9Y678 874 aaKnown RBP5.08□□□□□ -1.6
PCDH9-201ENST00000377861 LRRIQ4A6NIV6 560 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 MSH3P20585 1137 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 RECQLP46063 649 aaPredicted RBP5.08□□□□□ -1.6
PCDH9-201ENST00000377861 SLC7A5Q01650 507 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 DEPDC4Q8N2C3 294 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 TMIEQ8NEW7 156 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 SEMA4AQ9H3S1 761 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 HEY2Q9UBP5 337 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 SLC30A1Q9Y6M5 507 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 PEX3P56589 373 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 KIZQ2M2Z5 673 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 ILDR1Q86SU0 546 aaPredicted RBP5.08□□□□□ -1.6
PCDH9-201ENST00000377861 EVA1AQ9H8M9 152 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 CROCC2H7BZ55 1655 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 CYP26A1O43174 497 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 PEPDP12955 493 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 SESN3P58005 492 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 FLOT2Q14254 428 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 MAPK11Q15759 364 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 MICALL2Q8IY33 904 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 PRELID2Q8N945 189 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 STAG3L4Q8TBR4 150 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 AKT1S1Q96B36 256 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 TRERF1Q96PN7 1200 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 MRPL39Q9NYK5 338 aaKnown RBP5.08□□□□□ -1.6
PCDH9-201ENST00000377861 USP18Q9UMW8 372 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 GABPAQ06546 454 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 APTXQ7Z2E3 356 aaKnown RBP5.08□□□□□ -1.6
PCDH9-201ENST00000377861 SLC20A1Q8WUM9 679 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 PSMB7Q99436 277 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 MAP4P27816 1152 aaKnown RBP5.08□□□□□ -1.6
PCDH9-201ENST00000377861 HOXD10P28358 340 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 MPZL3Q6UWV2 235 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 GPKOWQ92917 476 aaPredicted RBP eCLIP5.08□□□□□ -1.6
PCDH9-201ENST00000377861 CDC42EP4Q9H3Q1 356 aaKnown RBP5.08□□□□□ -1.6
PCDH9-201ENST00000377861 DMTF1Q9Y222 760 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 PLIN4Q96Q06 1357 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 CAPN1P07384 714 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 FAM187BQ17R55 369 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 GNL1P36915 607 aaPredicted RBP5.08□□□□□ -1.6
PCDH9-201ENST00000377861 IFNAR2P48551 515 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 BCAT1P54687 386 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 TMEM154Q6P9G4 183 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 FBXO22Q8NEZ5 403 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 DAGLAQ9Y4D2 1042 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 KIAA1841Q6NSI8 718 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 RNF145Q96MT1 663 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 EIF3LQ9Y262 564 aaKnown RBP5.08□□□□□ -1.6
PCDH9-201ENST00000377861 HEATR9A2RTY3 570 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 GPR182O15218 404 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 MED24O75448 989 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 C1DQ13901 141 aaKnown RBP5.08□□□□□ -1.6
PCDH9-201ENST00000377861 ZNF827Q17R98 1081 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 ANKRD42Q8N9B4 389 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 POPDC3Q9HBV1 291 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 PRM3Q9NNZ6 103 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 PTTG2Q9NZH5 202 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 CNTNAP5Q8WYK1 1306 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 SRGAP2O75044 1071 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 ICAM3P32942 547 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 PPIDQ08752 370 aaKnown RBP5.08□□□□□ -1.6
PCDH9-201ENST00000377861 ZSWIM7Q19AV6 140 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 GNASQ5JWF2 1037 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 CLNKQ7Z7G1 428 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 GALNT7Q86SF2 657 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 PM20D2Q8IYS1 436 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 SNX31Q8N9S9 440 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 AHSPQ9NZD4 102 aa5.08□□□□□ -1.6
PCDH9-201ENST00000377861 PHF20L1A8MW92 1017 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms