RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 DNAJC3Q13217 504 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 NPNTQ6UXI9 565 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 BBS12Q6ZW61 710 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 TOP6BLQ8N6T0 577 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 NAALADL1Q9UQQ1 740 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 AAR2Q9Y312 384 aaKnown RBP14.98□□□□□ -0.01
TCOF1-202ENST00000377797 TPD52P55327 224 aaPredicted RBP14.98□□□□□ -0.01
TCOF1-202ENST00000377797 OCRLQ01968 901 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 TMC7Q7Z402 723 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 TFAP2DQ7Z6R9 452 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 CCNJLQ8IV13 435 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 RNF157Q96PX1 679 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 PCYT2Q99447 389 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 NINJ2Q9NZG7 142 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 MARCOQ9UEW3 520 aaPredicted RBP14.98□□□□□ -0.01
TCOF1-202ENST00000377797 FARP1Q9Y4F1 1045 aaPredicted RBP14.98□□□□□ -0.01
TCOF1-202ENST00000377797 TELO2Q9Y4R8 837 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 hCG_1818297A0A087WSY0 165 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 GYG2O15488 501 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 MEFVO15553 781 aaPredicted RBP14.98□□□□□ -0.01
TCOF1-202ENST00000377797 SLC8A1P32418 973 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 STX3Q13277 289 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 TUSC3Q13454 348 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 DUPD1Q68J44 220 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 FRA10AC1Q70Z53 315 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 ILDR2Q71H61 639 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.98□□□□□ -0.01
TCOF1-202ENST00000377797 PRUNE1Q86TP1 453 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 RASGEF1CQ8N431 466 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 MRPS31Q92665 395 aaKnown RBP14.98□□□□□ -0.01
TCOF1-202ENST00000377797 SEC16BQ96JE7 1060 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 ETNK1Q9HBU6 452 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 ERVK-5Q9HDB9 667 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 ABCF3Q9NUQ8 709 aa14.98□□□□□ -0.01
TCOF1-202ENST00000377797 RBM22Q9NW64 420 aaKnown RBP eCLIP14.98□□□□□ -0.014e-6■■■■□ 24.3
TCOF1-202ENST00000377797 SNX2O60749 519 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 DRG2P55039 364 aaKnown RBP14.97□□□□□ -0.01
TCOF1-202ENST00000377797 GRB14Q14449 540 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 MUM1Q2TAK8 710 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 ZC3H12AQ5D1E8 599 aaKnown RBP14.97□□□□□ -0.01
TCOF1-202ENST00000377797 LDLRAD1Q5T700 205 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 SLC4A11Q8NBS3 891 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 SERPINB11Q96P15 392 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 LRRC40Q9H9A6 602 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 NPHS2Q9NP85 383 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 MORF4L1Q9UBU8 362 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 H0Y626 953 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 CFLARO15519 480 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 MBL2P11226 248 aaPredicted RBP14.97□□□□□ -0.01
TCOF1-202ENST00000377797 GRIK3Q13003 919 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 TIGD7Q6NT04 549 aaPredicted RBP14.97□□□□□ -0.01
TCOF1-202ENST00000377797 GANCQ8TET4 914 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 TSR3Q9UJK0 312 aaKnown RBP14.97□□□□□ -0.01
TCOF1-202ENST00000377797 SLC39A10Q9ULF5 831 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 GRID1Q9ULK0 1009 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 ADAMTS5Q9UNA0 930 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 SCN7AQ01118 1682 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 RNF103O00237 685 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 ZWINTO95229 277 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 FLT3P36888 993 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 TUBP50607 506 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 CDH18Q13634 790 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 SPATA24Q86W54 205 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 ZC3H3Q8IXZ2 948 aaKnown RBP14.97□□□□□ -0.01
TCOF1-202ENST00000377797 MYLPFQ96A32 169 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 CYP1A1P04798 512 aaPredicted RBP14.97□□□□□ -0.01
TCOF1-202ENST00000377797 TNFRSF8P28908 595 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 DPYSL3Q14195 570 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 ANKRD20A8PQ5CZ79 823 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 ACAD11Q709F0 780 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 CNPY4Q8N129 248 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 FAM111AQ96PZ2 611 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 TSPAN18Q96SJ8 248 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 FTHL17Q9BXU8 183 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 TASP1Q9H6P5 420 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 PIH1D1Q9NWS0 290 aaKnown RBP14.97□□□□□ -0.01
TCOF1-202ENST00000377797 PCDHGC3Q9UN70 934 aa14.97□□□□□ -0.01
TCOF1-202ENST00000377797 DRG1Q9Y295 367 aaKnown RBP14.97□□□□□ -0.01
TCOF1-202ENST00000377797 SNAI1O95863 264 aaPredicted RBP14.96□□□□□ -0.01
TCOF1-202ENST00000377797 GRK4P32298 578 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 AARSP49588 968 aaKnown RBP eCLIP14.96□□□□□ -0.012e-6■■■□□ 15.7
TCOF1-202ENST00000377797 ART3Q13508 389 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 E2F5Q15329 346 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 ARMC2Q8NEN0 867 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 CALML6Q8TD86 181 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 ELMO2Q96JJ3 720 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 UROC1Q96N76 676 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 DUSP16Q9BY84 665 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 SLC24A2Q9UI40 661 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 CCDC160A6NGH7 325 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 ATP5HO75947 161 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 FAM35AQ86V20 835 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 DEFB118Q96PH6 123 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 VCXQ9H320 206 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 LMCD1Q9NZU5 365 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 OR12D3Q9UGF7 316 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 C4AP0C0L4 1744 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 F8W8V4 182 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 EDNRBP24530 442 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 RABGAP1LQ5R372 815 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms