RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.88□□□□□ -0.03
HMGA1-203ENST00000374116 SYN3O14994 580 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 ATP2C2O75185 946 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 STAU1O95793 577 aaKnown RBP14.87□□□□□ -0.03
HMGA1-203ENST00000374116 RARGP13631 454 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 ITIH2P19823 946 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 HPDP32754 393 aaPredicted RBP14.87□□□□□ -0.03
HMGA1-203ENST00000374116 OR1D2P34982 312 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 GCKP35557 465 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 PSMC1P62191 440 aaKnown RBP14.87□□□□□ -0.03
HMGA1-203ENST00000374116 PTK6Q13882 451 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 ZNF394Q53GI3 561 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 ODF2Q5BJF6 829 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 TCEAL5Q5H9L2 206 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 TMEM35BQ8NCS4 154 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 OR6B3Q8NGW1 331 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 EXD1Q8NHP7 514 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 CENPTQ96BT3 561 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 ANKRD27Q96NW4 1050 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 PGLYRP2Q96PD5 576 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 DPEP3Q9H4B8 488 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 DDX43Q9NXZ2 648 aaKnown RBP14.87□□□□□ -0.03
HMGA1-203ENST00000374116 CORO1CQ9ULV4 474 aaPredicted RBP14.87□□□□□ -0.03
HMGA1-203ENST00000374116 CARNS1A5YM72 827 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 GAS8O95995 478 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 FOSL2P15408 326 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 SSTR3P32745 418 aaPredicted RBP14.87□□□□□ -0.03
HMGA1-203ENST00000374116 CETN2P41208 172 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 PPP2R2AP63151 447 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 KLF1Q13351 362 aaPredicted RBP14.87□□□□□ -0.03
HMGA1-203ENST00000374116 MRPL58Q14197 206 aaKnown RBP14.87□□□□□ -0.03
HMGA1-203ENST00000374116 GKAP1Q5VSY0 366 aaPredicted RBP14.87□□□□□ -0.03
HMGA1-203ENST00000374116 GPR153Q6NV75 609 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 ATL2Q8NHH9 583 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 RNF25Q96BH1 459 aaPredicted RBP14.87□□□□□ -0.03
HMGA1-203ENST00000374116 TLCD1Q96CP7 247 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 KLHL5Q96PQ7 755 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 TMEM109Q9BVC6 243 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 LHX5Q9H2C1 402 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 FAM124BQ9H5Z6 455 aaPredicted RBP14.87□□□□□ -0.03
HMGA1-203ENST00000374116 CYP3A43Q9HB55 503 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 NGRNQ9NPE2 291 aaKnown RBP14.87□□□□□ -0.03
HMGA1-203ENST00000374116 NOVA2Q9UNW9 492 aaKnown RBP14.87□□□□□ -0.03
HMGA1-203ENST00000374116 SLC12A4Q9UP95 1085 aa14.87□□□□□ -0.03
HMGA1-203ENST00000374116 TMEM191CA6NGB0 347 aa14.86□□□□□ -0.03
HMGA1-203ENST00000374116 LINC01565O15544 149 aa14.86□□□□□ -0.03
HMGA1-203ENST00000374116 SMNDC1O75940 238 aaKnown RBP eCLIP14.86□□□□□ -0.03
HMGA1-203ENST00000374116 RALAP11233 206 aa14.86□□□□□ -0.03
HMGA1-203ENST00000374116 KLRC2P26717 231 aa14.86□□□□□ -0.03
HMGA1-203ENST00000374116 RAD23BP54727 409 aa14.86□□□□□ -0.03
HMGA1-203ENST00000374116 TAS2R40P59535 323 aa14.86□□□□□ -0.03
HMGA1-203ENST00000374116 CAV1Q03135 178 aa14.86□□□□□ -0.03
HMGA1-203ENST00000374116 SNX1Q13596 522 aa14.86□□□□□ -0.03
HMGA1-203ENST00000374116 E2F5Q15329 346 aa14.86□□□□□ -0.03
HMGA1-203ENST00000374116 CCNG2Q16589 344 aa14.86□□□□□ -0.03
HMGA1-203ENST00000374116 PPP1R15BQ5SWA1 713 aa14.86□□□□□ -0.03
HMGA1-203ENST00000374116 ANKS3Q6ZW76 656 aa14.86□□□□□ -0.03
HMGA1-203ENST00000374116 BZW1Q7L1Q6 419 aaKnown RBP14.86□□□□□ -0.03
HMGA1-203ENST00000374116 LRRTM3Q86VH5 581 aa14.86□□□□□ -0.03
HMGA1-203ENST00000374116 METTL23Q86XA0 190 aa14.86□□□□□ -0.03
HMGA1-203ENST00000374116 TOP6BLQ8N6T0 577 aa14.86□□□□□ -0.03
HMGA1-203ENST00000374116 PGM2Q96G03 612 aa14.86□□□□□ -0.03
HMGA1-203ENST00000374116 SNF8Q96H20 258 aa14.86□□□□□ -0.03
HMGA1-203ENST00000374116 TWNKQ96RR1 684 aa14.86□□□□□ -0.03
HMGA1-203ENST00000374116 OSBPL8Q9BZF1 889 aa14.86□□□□□ -0.03
HMGA1-203ENST00000374116 TLE6Q9H808 572 aa14.86□□□□□ -0.03
HMGA1-203ENST00000374116 PLXNA3P51805 1871 aa14.86□□□□□ -0.03
HMGA1-203ENST00000374116 CILPO75339 1184 aa14.85□□□□□ -0.03
HMGA1-203ENST00000374116 OAZ2O95190 189 aa14.85□□□□□ -0.03
HMGA1-203ENST00000374116 CYP11A1P05108 521 aa14.85□□□□□ -0.03
HMGA1-203ENST00000374116 TYMPP19971 482 aa14.85□□□□□ -0.03
HMGA1-203ENST00000374116 GNL1P36915 607 aaPredicted RBP14.85□□□□□ -0.03
HMGA1-203ENST00000374116 SSR1P43307 286 aaKnown RBP14.85□□□□□ -0.03
HMGA1-203ENST00000374116 MAGOHP61326 146 aaKnown RBP14.85□□□□□ -0.03
HMGA1-203ENST00000374116 SLC29A2Q14542 456 aa14.85□□□□□ -0.03
HMGA1-203ENST00000374116 ITIH4Q14624 930 aa14.85□□□□□ -0.03
HMGA1-203ENST00000374116 RBBP5Q15291 538 aaKnown RBP14.85□□□□□ -0.03
HMGA1-203ENST00000374116 QPCTQ16769 361 aa14.85□□□□□ -0.03
HMGA1-203ENST00000374116 LRRC38Q5VT99 294 aa14.85□□□□□ -0.03
HMGA1-203ENST00000374116 ZNF280DQ6N043 979 aa14.85□□□□□ -0.03
HMGA1-203ENST00000374116 TRMT10CQ7L0Y3 403 aaKnown RBP14.85□□□□□ -0.03
HMGA1-203ENST00000374116 LIMS2Q7Z4I7 341 aa14.85□□□□□ -0.03
HMGA1-203ENST00000374116 RCOR2Q8IZ40 523 aa14.85□□□□□ -0.03
HMGA1-203ENST00000374116 NSMCE1Q8WV22 266 aa14.85□□□□□ -0.03
HMGA1-203ENST00000374116 HERPUD2Q9BSE4 406 aa14.85□□□□□ -0.03
HMGA1-203ENST00000374116 SEMA4AQ9H3S1 761 aa14.85□□□□□ -0.03
HMGA1-203ENST00000374116 CNOT10Q9H9A5 744 aaKnown RBP14.85□□□□□ -0.03
HMGA1-203ENST00000374116 TMLHEQ9NVH6 421 aa14.85□□□□□ -0.03
HMGA1-203ENST00000374116 MTRRQ9UBK8 725 aa14.85□□□□□ -0.03
HMGA1-203ENST00000374116 ASIC3Q9UHC3 531 aa14.85□□□□□ -0.03
HMGA1-203ENST00000374116 USTQ9Y2C2 406 aa14.85□□□□□ -0.03
HMGA1-203ENST00000374116 WDR27A2RRH5 827 aa14.85□□□□□ -0.03
HMGA1-203ENST00000374116 A8MXQ7 604 aa14.85□□□□□ -0.03
HMGA1-203ENST00000374116 GABRDO14764 452 aa14.85□□□□□ -0.03
HMGA1-203ENST00000374116 TBC1D4O60343 1298 aa14.85□□□□□ -0.03
HMGA1-203ENST00000374116 CLASP2O75122 1294 aaKnown RBP14.85□□□□□ -0.03
HMGA1-203ENST00000374116 SNUPNO95149 360 aaKnown RBP14.85□□□□□ -0.03
HMGA1-203ENST00000374116 SHBGP04278 402 aa14.85□□□□□ -0.03
HMGA1-203ENST00000374116 CPB1P15086 417 aa14.85□□□□□ -0.03
HMGA1-203ENST00000374116 EPCAMP16422 314 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms