RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 LRRC14BA6NHZ5 514 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 LUC7L3O95232 432 aaKnown RBP7.56□□□□□ -1.2
VPS13A-202ENST00000357409 PRKCGP05129 697 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 ZCCHC18P0CG32 403 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 CD86P42081 329 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 FRMD5Q7Z6J6 570 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 NLRP14Q86W24 1093 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 TEX9Q8N6V9 391 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 EVPLLA8MZ36 301 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 CYP3A4P08684 503 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 FLT3LGP49771 235 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 PREPLQ4J6C6 727 aaPredicted RBP7.56□□□□□ -1.2
VPS13A-202ENST00000357409 FGD3Q5JSP0 725 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 LINGO4Q6UY18 593 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 GUF1Q8N442 669 aaKnown RBP7.56□□□□□ -1.2
VPS13A-202ENST00000357409 KAT5Q92993 513 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 STK36Q9NRP7 1315 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 EPORP19235 508 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 CCNA2P20248 432 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 PIGHQ14442 188 aaPredicted RBP7.56□□□□□ -1.2
VPS13A-202ENST00000357409 CYP51A1Q16850 503 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 SLC2A14Q8TDB8 520 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 RPL10LQ96L21 214 aaKnown RBP7.56□□□□□ -1.2
VPS13A-202ENST00000357409 KLHL5Q96PQ7 755 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 STK33Q9BYT3 514 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 AGO4Q9HCK5 861 aaKnown RBP7.56□□□□□ -1.2
VPS13A-202ENST00000357409 SIRPGQ9P1W8 387 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 MAGEB2O15479 319 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 F7P08709 466 aaPredicted RBP7.56□□□□□ -1.2
VPS13A-202ENST00000357409 ABCD1P33897 745 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 TRAF2Q12933 501 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 TMC5Q6UXY8 1006 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 SLC41A1Q8IVJ1 513 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 LPAR1Q92633 364 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 MAML3Q96JK9 1138 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 PDCD2LQ9BRP1 358 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 TMEM8AQ9HCN3 771 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 OPLAHO14841 1288 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 CASP9P55211 416 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 BCL2L1Q07817 233 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 WSCD1Q658N2 575 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 FAM110BQ8TC76 370 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 UCMAQ8WVF2 138 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 FAR2Q96K12 515 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 NYAP2Q9P242 653 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 LNPEPQ9UIQ6 1025 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 A0A0U1RQJ8 604 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 KLRG2A4D1S0 409 aaPredicted RBP7.56□□□□□ -1.2
VPS13A-202ENST00000357409 SLC31A1O15431 190 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 ERAL1O75616 437 aaKnown RBP7.56□□□□□ -1.2
VPS13A-202ENST00000357409 ZMPSTE24O75844 475 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 BAIAP3O94812 1187 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 CLUP10909 449 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 SLC8A1P32418 973 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 CYP4F3Q08477 520 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 CYP39A1Q9NYL5 469 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 TTC24A2A3L6 582 aaPredicted RBP7.56□□□□□ -1.2
VPS13A-202ENST00000357409 FFAR3O14843 346 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 GPR42O15529 346 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 MSX2P35548 267 aaPredicted RBP7.56□□□□□ -1.2
VPS13A-202ENST00000357409 SEMA5AQ13591 1074 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 CCNIQ14094 377 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 LPAL2Q16609 132 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 KHDRBS2Q5VWX1 349 aaKnown RBP7.56□□□□□ -1.2
VPS13A-202ENST00000357409 RAET1GQ6H3X3 334 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 LDB1Q86U70 411 aaPredicted RBP7.56□□□□□ -1.2
VPS13A-202ENST00000357409 CIR1Q86X95 450 aaPredicted RBP7.56□□□□□ -1.2
VPS13A-202ENST00000357409 ZNF366Q8N895 744 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 SYT15Q9BQS2 421 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 CLEC4AQ9UMR7 237 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 CDYLQ9Y232 598 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 SPATA31E1Q6ZUB1 1445 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 EML1O00423 815 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 VAPBO95292 243 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 PON1P27169 355 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 RPA1P27694 616 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 NOS3P29474 1203 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 SREBF1P36956 1147 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 THOP1P52888 689 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 CENPCQ03188 943 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 SFSWAPQ12872 951 aaKnown RBP7.55□□□□□ -1.2
VPS13A-202ENST00000357409 CNGA2Q16280 664 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 SETMARQ53H47 684 aaPredicted RBP7.55□□□□□ -1.2
VPS13A-202ENST00000357409 MTHFD1LQ6UB35 978 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 ADGRG6Q86SQ4 1221 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 ZNF713Q8N859 430 aaPredicted RBP7.55□□□□□ -1.2
VPS13A-202ENST00000357409 ZNF555Q8NEP9 628 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 CHST13Q8NET6 341 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 GPR156Q8NFN8 814 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 ZMAT2Q96NC0 199 aaKnown RBP7.55□□□□□ -1.2
VPS13A-202ENST00000357409 HEY2Q9UBP5 337 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 GMEB2Q9UKD1 530 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 NEDD8-MDP1E9PL57 170 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 OGTO15294 1046 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 SLC18A3Q16572 532 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 DGKKQ5KSL6 1271 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 TCHHL1Q5QJ38 904 aaPredicted RBP7.55□□□□□ -1.2
VPS13A-202ENST00000357409 CRTC3Q6UUV7 619 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 CYP20A1Q6UW02 462 aa7.55□□□□□ -1.2
VPS13A-202ENST00000357409 PLD3Q8IV08 490 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms