RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 STRIP2Q9ULQ0 834 aa19.24■□□□□ 0.67
CLN3-202ENST00000355477 ZNF510Q9Y2H8 683 aa19.24■□□□□ 0.67
CLN3-202ENST00000355477 THADAQ6YHU6 1953 aa19.24■□□□□ 0.67
CLN3-202ENST00000355477 SGK1O00141 431 aa19.23■□□□□ 0.67
CLN3-202ENST00000355477 AXIN1O15169 862 aa19.23■□□□□ 0.67
CLN3-202ENST00000355477 ADAM23O75077 832 aa19.23■□□□□ 0.67
CLN3-202ENST00000355477 RPP40O75818 363 aaKnown RBP19.23■□□□□ 0.67
CLN3-202ENST00000355477 LETM1O95202 739 aaPredicted RBP19.23■□□□□ 0.67
CLN3-202ENST00000355477 KLF8O95600 359 aaPredicted RBP19.23■□□□□ 0.67
CLN3-202ENST00000355477 APBB3O95704 486 aa19.23■□□□□ 0.67
CLN3-202ENST00000355477 CISD3P0C7P0 127 aa19.23■□□□□ 0.67
CLN3-202ENST00000355477 MAN2A1Q16706 1144 aa19.23■□□□□ 0.67
CLN3-202ENST00000355477 MIIPQ5JXC2 388 aa19.23■□□□□ 0.67
CLN3-202ENST00000355477 LAIR1Q6GTX8 287 aa19.23■□□□□ 0.67
CLN3-202ENST00000355477 TOGARAM2Q6ZUX3 1019 aa19.23■□□□□ 0.67
CLN3-202ENST00000355477 CEP68Q76N32 757 aa19.23■□□□□ 0.67
CLN3-202ENST00000355477 ENOSF1Q7L5Y1 443 aa19.23■□□□□ 0.67
CLN3-202ENST00000355477 DENND1CQ8IV53 801 aa19.23■□□□□ 0.67
CLN3-202ENST00000355477 FAM160A2Q8N612 972 aaPredicted RBP19.23■□□□□ 0.67
CLN3-202ENST00000355477 TERB1Q8NA31 727 aa19.23■□□□□ 0.67
CLN3-202ENST00000355477 ZNF606Q8WXB4 792 aa19.23■□□□□ 0.67
CLN3-202ENST00000355477 HSFY1Q96LI6 401 aa19.23■□□□□ 0.67
CLN3-202ENST00000355477 DCLK3Q9C098 648 aa19.23■□□□□ 0.67
CLN3-202ENST00000355477 PARD6AQ9NPB6 346 aa19.23■□□□□ 0.67
CLN3-202ENST00000355477 SIX2Q9NPC8 291 aa19.23■□□□□ 0.67
CLN3-202ENST00000355477 ABCC13Q9NSE7 274 aa19.23■□□□□ 0.67
CLN3-202ENST00000355477 SAMSN1Q9NSI8 373 aaKnown RBP19.23■□□□□ 0.67
CLN3-202ENST00000355477 OLA1Q9NTK5 396 aaKnown RBP19.23■□□□□ 0.67
CLN3-202ENST00000355477 APEX2Q9UBZ4 518 aa19.23■□□□□ 0.67
CLN3-202ENST00000355477 EBF1Q9UH73 591 aa19.23■□□□□ 0.67
CLN3-202ENST00000355477 DACH1Q9UI36 760 aa19.23■□□□□ 0.67
CLN3-202ENST00000355477 AJAP1Q9UKB5 411 aaPredicted RBP19.23■□□□□ 0.67
CLN3-202ENST00000355477 RPL34P49207 117 aaKnown RBP19.22■□□□□ 0.67
CLN3-202ENST00000355477 TRIP4Q15650 581 aaPredicted RBP19.22■□□□□ 0.67
CLN3-202ENST00000355477 CRY1Q16526 586 aa19.22■□□□□ 0.67
CLN3-202ENST00000355477 C10orf76Q5T2E6 689 aa19.22■□□□□ 0.67
CLN3-202ENST00000355477 GRAMD4Q6IC98 578 aa19.22■□□□□ 0.67
CLN3-202ENST00000355477 FAM114A1Q8IWE2 563 aa19.22■□□□□ 0.67
CLN3-202ENST00000355477 SCUBE3Q8IX30 993 aa19.22■□□□□ 0.67
CLN3-202ENST00000355477 TSTD1Q8NFU3 115 aa19.22■□□□□ 0.67
CLN3-202ENST00000355477 RNF139Q8WU17 664 aa19.22■□□□□ 0.67
CLN3-202ENST00000355477 IRGQQ8WZA9 623 aa19.22■□□□□ 0.67
CLN3-202ENST00000355477 GBP4Q96PP9 640 aa19.22■□□□□ 0.67
CLN3-202ENST00000355477 XPO6Q96QU8 1125 aaKnown RBP19.22■□□□□ 0.67
CLN3-202ENST00000355477 TUBGCP2Q9BSJ2 902 aa19.22■□□□□ 0.67
CLN3-202ENST00000355477 MIS12Q9H081 205 aa19.22■□□□□ 0.67
CLN3-202ENST00000355477 CYTH4Q9UIA0 394 aa19.22■□□□□ 0.67
CLN3-202ENST00000355477 GMEB2Q9UKD1 530 aa19.22■□□□□ 0.67
CLN3-202ENST00000355477 PRRT4C9JH25 899 aa19.21■□□□□ 0.67
CLN3-202ENST00000355477 DCLK1O15075 740 aa19.21■□□□□ 0.67
CLN3-202ENST00000355477 MSI1O43347 362 aaKnown RBP19.21■□□□□ 0.67
CLN3-202ENST00000355477 THAP12O43422 761 aa19.21■□□□□ 0.67
CLN3-202ENST00000355477 RETP07949 1114 aa19.21■□□□□ 0.67
CLN3-202ENST00000355477 PRKCSHP14314 528 aaPredicted RBP19.21■□□□□ 0.67
CLN3-202ENST00000355477 GNA15P30679 374 aa19.21■□□□□ 0.67
CLN3-202ENST00000355477 USP8P40818 1118 aa19.21■□□□□ 0.67
CLN3-202ENST00000355477 DGKEP52429 567 aa19.21■□□□□ 0.67
CLN3-202ENST00000355477 SPEM2Q0P670 501 aa19.21■□□□□ 0.67
CLN3-202ENST00000355477 PREPLQ4J6C6 727 aaPredicted RBP19.21■□□□□ 0.67
CLN3-202ENST00000355477 VWA3BQ502W6 1294 aa19.21■□□□□ 0.67
CLN3-202ENST00000355477 FYB2Q5VWT5 728 aa19.21■□□□□ 0.67
CLN3-202ENST00000355477 DPY19L2P1Q6NXN4 242 aa19.21■□□□□ 0.67
CLN3-202ENST00000355477 KBTBD6Q86V97 674 aa19.21■□□□□ 0.67
CLN3-202ENST00000355477 SHC3Q92529 594 aa19.21■□□□□ 0.67
CLN3-202ENST00000355477 NUP205Q92621 2012 aa19.21■□□□□ 0.67
CLN3-202ENST00000355477 PLD4Q96BZ4 506 aa19.21■□□□□ 0.67
CLN3-202ENST00000355477 NDST4Q9H3R1 872 aa19.21■□□□□ 0.67
CLN3-202ENST00000355477 FBXO10Q9UK96 956 aa19.21■□□□□ 0.67
CLN3-202ENST00000355477 STARD13Q9Y3M8 1113 aa19.21■□□□□ 0.67
CLN3-202ENST00000355477 HBS1LQ9Y450 684 aaKnown RBP19.21■□□□□ 0.67
CLN3-202ENST00000355477 LAMA1P25391 3075 aa19.21■□□□□ 0.67
CLN3-202ENST00000355477 CACNA1AO00555 2505 aa19.2■□□□□ 0.66
CLN3-202ENST00000355477 GON4LQ3T8J9 2241 aa19.2■□□□□ 0.66
CLN3-202ENST00000355477 CEP192Q8TEP8 1941 aa19.2■□□□□ 0.66
CLN3-202ENST00000355477 PENKP01210 267 aaPredicted RBP19.2■□□□□ 0.66
CLN3-202ENST00000355477 LTFP02788 710 aa19.2■□□□□ 0.66
CLN3-202ENST00000355477 FYNP06241 537 aa19.2■□□□□ 0.66
CLN3-202ENST00000355477 CHKAP35790 457 aa19.2■□□□□ 0.66
CLN3-202ENST00000355477 HSF5Q4G112 596 aaPredicted RBP19.2■□□□□ 0.66
CLN3-202ENST00000355477 ANO7Q6IWH7 933 aa19.2■□□□□ 0.66
CLN3-202ENST00000355477 MSANTD2Q6P1R3 559 aa19.2■□□□□ 0.66
CLN3-202ENST00000355477 RBM43Q6ZSC3 357 aaKnown RBP19.2■□□□□ 0.66
CLN3-202ENST00000355477 CACNA2D4Q7Z3S7 1137 aa19.2■□□□□ 0.66
CLN3-202ENST00000355477 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.2■□□□□ 0.66
CLN3-202ENST00000355477 FAM217AQ8IXS0 508 aa19.2■□□□□ 0.66
CLN3-202ENST00000355477 ZNF513Q8N8E2 541 aaPredicted RBP19.2■□□□□ 0.66
CLN3-202ENST00000355477 FAM81BQ96LP2 452 aa19.2■□□□□ 0.66
CLN3-202ENST00000355477 SLC4A5Q9BY07 1137 aa19.2■□□□□ 0.66
CLN3-202ENST00000355477 TPSD1Q9BZJ3 242 aa19.2■□□□□ 0.66
CLN3-202ENST00000355477 ST7Q9NRC1 585 aa19.2■□□□□ 0.66
CLN3-202ENST00000355477 INVSQ9Y283 1065 aa19.2■□□□□ 0.66
CLN3-202ENST00000355477 KCNJ18B7U540 433 aa19.19■□□□□ 0.66
CLN3-202ENST00000355477 FOXN3O00409 490 aaPredicted RBP19.19■□□□□ 0.66
CLN3-202ENST00000355477 MED7O43513 233 aa19.19■□□□□ 0.66
CLN3-202ENST00000355477 FBXO21O94952 628 aa19.19■□□□□ 0.66
CLN3-202ENST00000355477 DGKGP49619 791 aa19.19■□□□□ 0.66
CLN3-202ENST00000355477 KCNMA1Q12791 1236 aa19.19■□□□□ 0.66
CLN3-202ENST00000355477 KCNJ12Q14500 433 aa19.19■□□□□ 0.66
CLN3-202ENST00000355477 MEA1Q16626 185 aa19.19■□□□□ 0.66
CLN3-202ENST00000355477 CT47A1Q5JQC4 288 aaPredicted RBP19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms