RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 FAM210AQ96ND0 272 aa9.64□□□□□ -0.87
ATG4A-202ENST00000345734 TACO1Q9BSH4 297 aaKnown RBP9.64□□□□□ -0.87
ATG4A-202ENST00000345734 FAM204AQ9H8W3 233 aa9.64□□□□□ -0.87
ATG4A-202ENST00000345734 CRTAC1Q9NQ79 661 aa9.64□□□□□ -0.87
ATG4A-202ENST00000345734 DDX43Q9NXZ2 648 aaKnown RBP9.64□□□□□ -0.87
ATG4A-202ENST00000345734 NFS1Q9Y697 457 aa9.64□□□□□ -0.87
ATG4A-202ENST00000345734 TSC2P49815 1807 aa9.63□□□□□ -0.87
ATG4A-202ENST00000345734 SPINT1O43278 529 aa9.63□□□□□ -0.87
ATG4A-202ENST00000345734 OPA1O60313 960 aa9.63□□□□□ -0.87
ATG4A-202ENST00000345734 GAS8O95995 478 aa9.63□□□□□ -0.87
ATG4A-202ENST00000345734 MAP2K2P36507 400 aa9.63□□□□□ -0.87
ATG4A-202ENST00000345734 RPL34P49207 117 aaKnown RBP9.63□□□□□ -0.87
ATG4A-202ENST00000345734 RAB27AP51159 221 aa9.63□□□□□ -0.87
ATG4A-202ENST00000345734 BYSLQ13895 437 aaKnown RBP9.63□□□□□ -0.87
ATG4A-202ENST00000345734 TAZQ16635 292 aa9.63□□□□□ -0.87
ATG4A-202ENST00000345734 TIGD5Q53EQ6 642 aa9.63□□□□□ -0.87
ATG4A-202ENST00000345734 RTN4RL1Q86UN2 441 aaPredicted RBP9.63□□□□□ -0.87
ATG4A-202ENST00000345734 PIGZQ86VD9 579 aa9.63□□□□□ -0.87
ATG4A-202ENST00000345734 HASPINQ8TF76 798 aa9.63□□□□□ -0.87
ATG4A-202ENST00000345734 FAM172AQ8WUF8 416 aa9.63□□□□□ -0.87
ATG4A-202ENST00000345734 SGSM3Q96HU1 749 aa9.63□□□□□ -0.87
ATG4A-202ENST00000345734 HNRNPABQ99729 332 aaKnown RBP9.63□□□□□ -0.87
ATG4A-202ENST00000345734 DUSP16Q9BY84 665 aa9.63□□□□□ -0.87
ATG4A-202ENST00000345734 EPB41L4BQ9H329 900 aa9.63□□□□□ -0.87
ATG4A-202ENST00000345734 LRRC4CQ9HCJ2 640 aa9.63□□□□□ -0.87
ATG4A-202ENST00000345734 NGRNQ9NPE2 291 aaKnown RBP9.63□□□□□ -0.87
ATG4A-202ENST00000345734 GPATCH2LQ9NWQ4 482 aa9.63□□□□□ -0.87
ATG4A-202ENST00000345734 WHRNQ9P202 907 aa9.63□□□□□ -0.87
ATG4A-202ENST00000345734 ZNF638Q14966 1978 aaKnown RBP9.63□□□□□ -0.87
ATG4A-202ENST00000345734 TET1Q8NFU7 2136 aa9.63□□□□□ -0.87
ATG4A-202ENST00000345734 MKI67P46013 3256 aaKnown RBP9.63□□□□□ -0.87
ATG4A-202ENST00000345734 MYBPHLA2RUH7 354 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 XPO1O14980 1071 aaKnown RBP9.62□□□□□ -0.87
ATG4A-202ENST00000345734 PRPSAP2O60256 369 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 CST8O60676 142 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 FKTNO75072 461 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 ZSCAN5DPP0CG00 497 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 ETS1P14921 441 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 KLRC2P26717 231 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 SDC4P31431 198 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 GBP1P32455 592 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 RPL9P32969 192 aaKnown RBP9.62□□□□□ -0.87
ATG4A-202ENST00000345734 ADCY8P40145 1251 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 ATXN1P54253 815 aaKnown RBP9.62□□□□□ -0.87
ATG4A-202ENST00000345734 ARSJQ5FYB0 599 aaPredicted RBP9.62□□□□□ -0.87
ATG4A-202ENST00000345734 CEP85LQ5SZL2 805 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 SCYL2Q6P3W7 929 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 CD300LGQ6UXG3 332 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 SYDE1Q6ZW31 735 aaPredicted RBP9.62□□□□□ -0.87
ATG4A-202ENST00000345734 GSTA5Q7RTV2 222 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 ECHDC2Q86YB7 292 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 ITFG2Q969R8 447 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 SNF8Q96H20 258 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 SUSD3Q96L08 255 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 SYT15Q9BQS2 421 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 MED10Q9BTT4 135 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 C10orf88Q9H8K7 445 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 STARD7Q9NQZ5 370 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 AAASQ9NRG9 546 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.62□□□□□ -0.87
ATG4A-202ENST00000345734 VTI1BQ9UEU0 232 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 SUFUQ9UMX1 484 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 ZNF148Q9UQR1 794 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 PTCH2Q9Y6C5 1203 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 CCDC189A1A4V9 331 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 KLHL33A6NCF5 533 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 GOLGA6CA6NDK9 693 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 GOLGA8KD6RF30 607 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 F8W810 466 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 MYO1CO00159 1063 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 GOLGA6DP0CG33 693 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 ATF2P15336 505 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 VAMP1P23763 118 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 GRK4P32298 578 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 CHKAP35790 457 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 BRCC3P46736 316 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 NDUFV1P49821 464 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 RNF144AP50876 292 aaPredicted RBP9.62□□□□□ -0.87
ATG4A-202ENST00000345734 ARSEP51690 589 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 ITGA8P53708 1063 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 PMS2P54278 862 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 VCPP55072 806 aaKnown RBP9.62□□□□□ -0.87
ATG4A-202ENST00000345734 CDH6P55285 790 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 HDAC4P56524 1084 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 SNX16P57768 344 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 OTUD4Q01804 1114 aaKnown RBP9.62□□□□□ -0.87
ATG4A-202ENST00000345734 ZNF844Q08AG5 666 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 ADIGQ0VDE8 80 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 CALCOCO2Q13137 446 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 OASLQ15646 514 aaKnown RBP9.62□□□□□ -0.87
ATG4A-202ENST00000345734 ZC3H12AQ5D1E8 599 aaKnown RBP9.62□□□□□ -0.87
ATG4A-202ENST00000345734 KCTD16Q68DU8 428 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 DRICH1Q6PGQ1 229 aaPredicted RBP9.62□□□□□ -0.87
ATG4A-202ENST00000345734 RHBDF2Q6PJF5 856 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 LRIG3Q6UXM1 1119 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 CLEC20AQ6ZU45 233 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 BBS12Q6ZW61 710 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 ZNF365Q70YC5 407 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 CCDC25Q86WR0 208 aa9.62□□□□□ -0.87
ATG4A-202ENST00000345734 RFX6Q8HWS3 928 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms