RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 CDH5P33151 784 aaPredicted RBP23.15■■□□□ 1.3
TRIM28-202ENST00000341753 GMPRP36959 345 aa23.15■■□□□ 1.3
TRIM28-202ENST00000341753 TRIP10Q15642 601 aa23.15■■□□□ 1.3
TRIM28-202ENST00000341753 FASTKD1Q53R41 847 aaKnown RBP23.15■■□□□ 1.3
TRIM28-202ENST00000341753 TREML2Q5T2D2 321 aa23.15■■□□□ 1.3
TRIM28-202ENST00000341753 VWA5B1Q5TIE3 1220 aa23.15■■□□□ 1.3
TRIM28-202ENST00000341753 KLRG1Q96E93 195 aa23.15■■□□□ 1.3
TRIM28-202ENST00000341753 ZNF668Q96K58 619 aaPredicted RBP23.15■■□□□ 1.3
TRIM28-202ENST00000341753 VCX3BQ9H321 246 aa23.15■■□□□ 1.3
TRIM28-202ENST00000341753 USP29Q9HBJ7 922 aa23.15■■□□□ 1.3
TRIM28-202ENST00000341753 VCX3AQ9NNX9 186 aa23.15■■□□□ 1.3
TRIM28-202ENST00000341753 CLIC5Q9NZA1 410 aa23.15■■□□□ 1.3
TRIM28-202ENST00000341753 PCDHGC3Q9UN70 934 aa23.15■■□□□ 1.3
TRIM28-202ENST00000341753 E2F8A0AVK6 867 aa23.15■■□□□ 1.3
TRIM28-202ENST00000341753 CHADO15335 359 aa23.15■■□□□ 1.3
TRIM28-202ENST00000341753 ASPAP45381 313 aa23.15■■□□□ 1.3
TRIM28-202ENST00000341753 YWHAEP62258 255 aaKnown RBP23.15■■□□□ 1.3
TRIM28-202ENST00000341753 XKR3Q5GH77 459 aa23.15■■□□□ 1.3
TRIM28-202ENST00000341753 LGSNQ5TDP6 509 aa23.15■■□□□ 1.3
TRIM28-202ENST00000341753 CDR2LQ86X02 465 aaPredicted RBP23.15■■□□□ 1.3
TRIM28-202ENST00000341753 TRAF3IP1Q8TDR0 691 aaPredicted RBP23.15■■□□□ 1.3
TRIM28-202ENST00000341753 PHIPQ8WWQ0 1821 aa23.15■■□□□ 1.3
TRIM28-202ENST00000341753 ADAMTS5Q9UNA0 930 aa23.15■■□□□ 1.3
TRIM28-202ENST00000341753 SPATA31C2B4DYI2 1134 aa23.14■■□□□ 1.3
TRIM28-202ENST00000341753 APOEP02649 317 aa23.14■■□□□ 1.3
TRIM28-202ENST00000341753 SUPT20HL2P0C7V6 817 aa23.14■■□□□ 1.3
TRIM28-202ENST00000341753 TUBB3Q13509 450 aa23.14■■□□□ 1.3
TRIM28-202ENST00000341753 TBC1D25Q3MII6 688 aa23.14■■□□□ 1.3
TRIM28-202ENST00000341753 SUPT20HL1Q3ZLR7 823 aa23.14■■□□□ 1.3
TRIM28-202ENST00000341753 LRRC23Q53EV4 343 aaPredicted RBP23.14■■□□□ 1.3
TRIM28-202ENST00000341753 ATG14Q6ZNE5 492 aa23.14■■□□□ 1.3
TRIM28-202ENST00000341753 HPS6Q86YV9 775 aa23.14■■□□□ 1.3
TRIM28-202ENST00000341753 BRSK2Q8IWQ3 736 aa23.14■■□□□ 1.3
TRIM28-202ENST00000341753 PNPLA8Q9NP80 782 aa23.14■■□□□ 1.3
TRIM28-202ENST00000341753 ETNK2Q9NVF9 386 aa23.14■■□□□ 1.3
TRIM28-202ENST00000341753 DNAJB4Q9UDY4 337 aa23.14■■□□□ 1.3
TRIM28-202ENST00000341753 HMGXB4Q9UGU5 601 aa23.14■■□□□ 1.3
TRIM28-202ENST00000341753 DOCK1Q14185 1865 aa23.14■■□□□ 1.29
TRIM28-202ENST00000341753 SLC15A5A6NIM6 579 aa23.14■■□□□ 1.29
TRIM28-202ENST00000341753 FZD9O00144 591 aa23.14■■□□□ 1.29
TRIM28-202ENST00000341753 KRT38O76015 456 aa23.14■■□□□ 1.29
TRIM28-202ENST00000341753 KRT19P08727 400 aa23.14■■□□□ 1.29
TRIM28-202ENST00000341753 VCLP18206 1134 aa23.14■■□□□ 1.29
TRIM28-202ENST00000341753 GRIA1P42261 906 aa23.14■■□□□ 1.29
TRIM28-202ENST00000341753 NAMPTP43490 491 aa23.14■■□□□ 1.29
TRIM28-202ENST00000341753 MMEL1Q495T6 779 aa23.14■■□□□ 1.29
TRIM28-202ENST00000341753 NAT14Q8WUY8 206 aa23.14■■□□□ 1.29
TRIM28-202ENST00000341753 NCSTNQ92542 709 aa23.14■■□□□ 1.29
TRIM28-202ENST00000341753 KLHL4Q9C0H6 718 aa23.14■■□□□ 1.29
TRIM28-202ENST00000341753 RSAD1Q9HA92 442 aa23.14■■□□□ 1.29
TRIM28-202ENST00000341753 ARID2Q68CP9 1835 aa23.13■■□□□ 1.29
TRIM28-202ENST00000341753 AOC1P19801 751 aa23.13■■□□□ 1.29
TRIM28-202ENST00000341753 HNRNPDQ14103 355 aaKnown RBP23.13■■□□□ 1.29
TRIM28-202ENST00000341753 FAM102AQ5T9C2 384 aaPredicted RBP23.13■■□□□ 1.29
TRIM28-202ENST00000341753 FBXL19Q6PCT2 694 aa23.13■■□□□ 1.29
TRIM28-202ENST00000341753 PNPOQ9NVS9 261 aa23.13■■□□□ 1.29
TRIM28-202ENST00000341753 DKC1O60832 514 aaKnown RBP eCLIP23.13■■□□□ 1.29
TRIM28-202ENST00000341753 UQCRBP14927 111 aa23.13■■□□□ 1.29
TRIM28-202ENST00000341753 RAG1P15918 1043 aa23.13■■□□□ 1.29
TRIM28-202ENST00000341753 PRKCHP24723 683 aa23.13■■□□□ 1.29
TRIM28-202ENST00000341753 WASHC5Q12768 1159 aa23.13■■□□□ 1.29
TRIM28-202ENST00000341753 GRAMD1BQ3KR37 738 aa23.13■■□□□ 1.29
TRIM28-202ENST00000341753 XRRA1Q6P2D8 792 aa23.13■■□□□ 1.29
TRIM28-202ENST00000341753 OPTNQ96CV9 577 aa23.13■■□□□ 1.29
TRIM28-202ENST00000341753 C1orf21Q9H246 121 aa23.13■■□□□ 1.29
TRIM28-202ENST00000341753 THAP1Q9NVV9 213 aa23.13■■□□□ 1.29
TRIM28-202ENST00000341753 ZNF180Q9UJW8 692 aa23.13■■□□□ 1.29
TRIM28-202ENST00000341753 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP23.12■■□□□ 1.29
TRIM28-202ENST00000341753 PIGRP01833 764 aa23.12■■□□□ 1.29
TRIM28-202ENST00000341753 COPAP53621 1224 aa23.12■■□□□ 1.29
TRIM28-202ENST00000341753 CAPSQ13938 189 aa23.12■■□□□ 1.29
TRIM28-202ENST00000341753 SCYL2Q6P3W7 929 aa23.12■■□□□ 1.29
TRIM28-202ENST00000341753 MAVSQ7Z434 540 aa23.12■■□□□ 1.29
TRIM28-202ENST00000341753 SPATA24Q86W54 205 aa23.12■■□□□ 1.29
TRIM28-202ENST00000341753 WDR49Q8IV35 697 aa23.12■■□□□ 1.29
TRIM28-202ENST00000341753 PIWIL1Q96J94 861 aaKnown RBP23.12■■□□□ 1.29
TRIM28-202ENST00000341753 TWNKQ96RR1 684 aa23.12■■□□□ 1.29
TRIM28-202ENST00000341753 ZNF302Q9NR11 478 aa23.12■■□□□ 1.29
TRIM28-202ENST00000341753 PIH1D1Q9NWS0 290 aaKnown RBP23.12■■□□□ 1.29
TRIM28-202ENST00000341753 NR2E3Q9Y5X4 410 aa23.12■■□□□ 1.29
TRIM28-202ENST00000341753 SIN3BO75182 1162 aa23.12■■□□□ 1.29
TRIM28-202ENST00000341753 HMGCRP04035 888 aa23.12■■□□□ 1.29
TRIM28-202ENST00000341753 ADORA2AP29274 412 aa23.12■■□□□ 1.29
TRIM28-202ENST00000341753 LSAMPQ13449 338 aa23.12■■□□□ 1.29
TRIM28-202ENST00000341753 WDR75Q8IWA0 830 aaKnown RBP23.12■■□□□ 1.29
TRIM28-202ENST00000341753 DEPDC1BQ8WUY9 529 aa23.12■■□□□ 1.29
TRIM28-202ENST00000341753 SLC7A3Q8WY07 619 aa23.12■■□□□ 1.29
TRIM28-202ENST00000341753 OLFM3Q96PB7 478 aa23.12■■□□□ 1.29
TRIM28-202ENST00000341753 GCNAQ96QF7 691 aa23.12■■□□□ 1.29
TRIM28-202ENST00000341753 PAK5Q9P286 719 aa23.12■■□□□ 1.29
TRIM28-202ENST00000341753 MAFGO15525 162 aa23.11■■□□□ 1.29
TRIM28-202ENST00000341753 ZBED1O96006 694 aa23.11■■□□□ 1.29
TRIM28-202ENST00000341753 NCF2P19878 526 aaPredicted RBP23.11■■□□□ 1.29
TRIM28-202ENST00000341753 PDK3Q15120 406 aa23.11■■□□□ 1.29
TRIM28-202ENST00000341753 DUOXA2Q1HG44 320 aa23.11■■□□□ 1.29
TRIM28-202ENST00000341753 RABGAP1LQ5R372 815 aa23.11■■□□□ 1.29
TRIM28-202ENST00000341753 TRNP1Q6NT89 227 aa23.11■■□□□ 1.29
TRIM28-202ENST00000341753 DEFB107AQ8IZN7 70 aa23.11■■□□□ 1.29
TRIM28-202ENST00000341753 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.11■■□□□ 1.293e-21■□□□□ 10.8
TRIM28-202ENST00000341753 UBA3Q8TBC4 463 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms