RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 OMDQ99983 421 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 TUT1Q9H6E5 874 aaKnown RBP12.34□□□□□ -0.43
USP1-201ENST00000339950 TXNRD2Q9NNW7 524 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 BATF3Q9NR55 127 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 ETNK2Q9NVF9 386 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 PNPOQ9NVS9 261 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 NDE1Q9NXR1 346 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 SENP1Q9P0U3 644 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 PAK5Q9P286 719 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 FAF1Q9UNN5 650 aaPredicted RBP12.34□□□□□ -0.43
USP1-201ENST00000339950 SIGLEC16A6NMB1 481 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 TRUB2O95900 331 aaKnown RBP12.34□□□□□ -0.43
USP1-201ENST00000339950 JCHAINP01591 159 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 PROCP04070 461 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 FGFR1P11362 822 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 PTPN4P29074 926 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 PKNOX1P55347 436 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 MAP7D1Q3KQU3 841 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 SH2D4BQ5SQS7 431 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 RINLQ6ZS11 566 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 DEFB106AQ8N104 65 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 GSTCDQ8NEC7 633 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 OR6P1Q8NGX9 317 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 OXNAD1Q96HP4 312 aaPredicted RBP12.34□□□□□ -0.43
USP1-201ENST00000339950 TEPSINQ96N21 525 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 STRA6Q9BX79 667 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 CXCL16Q9H2A7 254 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 RNPEPL1Q9HAU8 725 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 C20orf96Q9NUD7 363 aaPredicted RBP12.34□□□□□ -0.43
USP1-201ENST00000339950 NFKBIEO00221 500 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 PEX1O43933 1283 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 METTL18O95568 372 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 LMO2P25791 158 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 HMGB2P26583 209 aaKnown RBP12.33□□□□□ -0.44
USP1-201ENST00000339950 NDUFV1P49821 464 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 BEX3Q00994 111 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 CYTH1Q15438 398 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 PLEKHG4Q58EX7 1191 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 ZNF618Q5T7W0 954 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 RNF220Q5VTB9 566 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 TTC39BQ5VTQ0 682 aaPredicted RBP12.33□□□□□ -0.44
USP1-201ENST00000339950 ZBTB46Q86UZ6 589 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 XYLT1Q86Y38 959 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 KCTD17Q8N5Z5 321 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 DNAJB3Q8WWF6 145 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 BHMTQ93088 406 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 ZNF570Q96NI8 536 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 PEBP4Q96S96 227 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 NXF3Q9H4D5 531 aaKnown RBP12.33□□□□□ -0.44
USP1-201ENST00000339950 TASP1Q9H6P5 420 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 DDIT4Q9NX09 232 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 ATRNL1Q5VV63 1379 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 APOC4-APOC2K7ER74 178 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 APOC2P02655 101 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 CALB2P22676 271 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 KLRC2P26717 231 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 PSMB4P28070 264 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 MCL1Q07820 350 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 POU6F1Q14863 301 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 DBN1Q16643 649 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 CCDC14Q49A88 953 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 OLFML2BQ68BL8 750 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 B3GNT9Q6UX72 402 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 IFNEQ86WN2 208 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 SLC4A11Q8NBS3 891 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 OR6J1Q8NGC5 347 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 OR52K1Q8NGK4 314 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 FBXO27Q8NI29 283 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 STK32AQ8WU08 396 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 WDR60Q8WVS4 1066 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 KLRG1Q96E93 195 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 CNTRLQ7Z7A1 2325 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 PHLPP1O60346 1717 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 MSCO60682 206 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 CYP2C9P11712 490 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 SNRPFP62306 86 aaKnown RBP12.33□□□□□ -0.44
USP1-201ENST00000339950 PITX1P78337 314 aaPredicted RBP12.33□□□□□ -0.44
USP1-201ENST00000339950 FBXO48Q5FWF7 155 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 RHBDF2Q6PJF5 856 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 APOBEC3FQ8IUX4 373 aaKnown RBP12.33□□□□□ -0.44
USP1-201ENST00000339950 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.33□□□□□ -0.44
USP1-201ENST00000339950 SREK1Q8WXA9 508 aaKnown RBP12.33□□□□□ -0.44
USP1-201ENST00000339950 PCYT2Q99447 389 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 NTPCRQ9BSD7 190 aaKnown RBP12.33□□□□□ -0.44
USP1-201ENST00000339950 VCX3AQ9NNX9 186 aa12.33□□□□□ -0.44
USP1-201ENST00000339950 CASTOR2A6NHX0 329 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 GPC4O75487 556 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 ATP5HO75947 161 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 CSH1P0DML2 217 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 CSH2P0DML3 217 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 ZNF268Q14587 947 aaPredicted RBP12.32□□□□□ -0.44
USP1-201ENST00000339950 BBS12Q6ZW61 710 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 RDM1Q8NG50 284 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 ZSCAN18Q8TBC5 510 aaPredicted RBP12.32□□□□□ -0.44
USP1-201ENST00000339950 CDCA5Q96FF9 252 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 FBXL18Q96ME1 805 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 ZFP42Q96MM3 310 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 HBP1O60381 514 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 EIF4BP23588 611 aaKnown RBP12.32□□□□□ -0.44
USP1-201ENST00000339950 ARL2P36404 184 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms