RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 ATF2P15336 505 aa19.15■□□□□ 0.66
USP39-201ENST00000323701 DESP17661 470 aa19.15■□□□□ 0.66
USP39-201ENST00000323701 EIF3EP60228 445 aaKnown RBP19.15■□□□□ 0.66
USP39-201ENST00000323701 USP46P62068 366 aa19.15■□□□□ 0.66
USP39-201ENST00000323701 SLC10A2Q12908 348 aaPredicted RBP19.15■□□□□ 0.66
USP39-201ENST00000323701 P3H1Q32P28 736 aa19.15■□□□□ 0.66
USP39-201ENST00000323701 FAM72AQ5TYM5 149 aa19.15■□□□□ 0.66
USP39-201ENST00000323701 FAM72DQ6L9T8 149 aa19.15■□□□□ 0.66
USP39-201ENST00000323701 ZNF771Q7L3S4 317 aaPredicted RBP19.15■□□□□ 0.66
USP39-201ENST00000323701 FAM72BQ86X60 149 aa19.15■□□□□ 0.66
USP39-201ENST00000323701 CSPG4P5Q96PW8 444 aa19.15■□□□□ 0.66
USP39-201ENST00000323701 ZNF670Q9BS34 389 aa19.15■□□□□ 0.66
USP39-201ENST00000323701 PNPLA8Q9NP80 782 aa19.15■□□□□ 0.66
USP39-201ENST00000323701 DNAJC17Q9NVM6 304 aaKnown RBP19.15■□□□□ 0.66
USP39-201ENST00000323701 SLC27A5Q9Y2P5 690 aa19.15■□□□□ 0.66
USP39-201ENST00000323701 HEY1Q9Y5J3 304 aa19.15■□□□□ 0.66
USP39-201ENST00000323701 H0YGN5 161 aa19.14■□□□□ 0.65
USP39-201ENST00000323701 EFEMP2O95967 443 aa19.14■□□□□ 0.65
USP39-201ENST00000323701 ACRP10323 421 aa19.14■□□□□ 0.65
USP39-201ENST00000323701 GBE1Q04446 702 aa19.14■□□□□ 0.65
USP39-201ENST00000323701 NOMO1Q15155 1222 aa19.14■□□□□ 0.65
USP39-201ENST00000323701 SCD5Q86SK9 330 aa19.14■□□□□ 0.65
USP39-201ENST00000323701 DCP1BQ8IZD4 617 aaKnown RBP19.14■□□□□ 0.65
USP39-201ENST00000323701 NMUR1Q9HB89 426 aa19.14■□□□□ 0.65
USP39-201ENST00000323701 DDIT4Q9NX09 232 aa19.14■□□□□ 0.65
USP39-201ENST00000323701 NUDT5Q9UKK9 219 aa19.14■□□□□ 0.65
USP39-201ENST00000323701 NFS1Q9Y697 457 aa19.14■□□□□ 0.65
USP39-201ENST00000323701 RANBP2P49792 3224 aaKnown RBP19.14■□□□□ 0.65
USP39-201ENST00000323701 RBP3P10745 1247 aa19.13■□□□□ 0.65
USP39-201ENST00000323701 ITIH2P19823 946 aa19.13■□□□□ 0.65
USP39-201ENST00000323701 AMPD1P23109 780 aa19.13■□□□□ 0.65
USP39-201ENST00000323701 CALCOCO2Q13137 446 aa19.13■□□□□ 0.65
USP39-201ENST00000323701 CFAP58Q5T655 872 aa19.13■□□□□ 0.65
USP39-201ENST00000323701 RNF19BQ6ZMZ0 732 aa19.13■□□□□ 0.65
USP39-201ENST00000323701 TAB3Q8N5C8 712 aaPredicted RBP19.13■□□□□ 0.65
USP39-201ENST00000323701 FAM71DQ8N9W8 422 aa19.13■□□□□ 0.65
USP39-201ENST00000323701 UBLCP1Q8WVY7 318 aaPredicted RBP19.13■□□□□ 0.65
USP39-201ENST00000323701 P3H4Q92791 437 aa19.13■□□□□ 0.65
USP39-201ENST00000323701 TOP1MTQ969P6 601 aa19.13■□□□□ 0.65
USP39-201ENST00000323701 NCAPGQ9BPX3 1015 aa19.13■□□□□ 0.65
USP39-201ENST00000323701 TMEM175Q9BSA9 504 aa19.13■□□□□ 0.65
USP39-201ENST00000323701 SEMA4AQ9H3S1 761 aa19.13■□□□□ 0.65
USP39-201ENST00000323701 OSER1Q9NX31 292 aa19.13■□□□□ 0.65
USP39-201ENST00000323701 PLAAQ9Y263 795 aa19.13■□□□□ 0.65
USP39-201ENST00000323701 RPL17P18621 184 aaKnown RBP19.13■□□□□ 0.65
USP39-201ENST00000323701 TFDP2Q14188 446 aa19.13■□□□□ 0.65
USP39-201ENST00000323701 ZNF280DQ6N043 979 aa19.13■□□□□ 0.65
USP39-201ENST00000323701 TAC4Q86UU9 113 aa19.13■□□□□ 0.65
USP39-201ENST00000323701 CCDC89Q8N998 374 aa19.13■□□□□ 0.65
USP39-201ENST00000323701 ANKLE1Q8NAG6 615 aa19.13■□□□□ 0.65
USP39-201ENST00000323701 TTC13Q8NBP0 860 aa19.13■□□□□ 0.65
USP39-201ENST00000323701 TRAF3IP1Q8TDR0 691 aaPredicted RBP19.13■□□□□ 0.65
USP39-201ENST00000323701 IRGQQ8WZA9 623 aa19.13■□□□□ 0.65
USP39-201ENST00000323701 SNX10Q9Y5X0 201 aa19.13■□□□□ 0.65
USP39-201ENST00000323701 CHD7Q9P2D1 2997 aa19.12■□□□□ 0.65
USP39-201ENST00000323701 APOL1O14791 398 aa19.12■□□□□ 0.65
USP39-201ENST00000323701 TIMP1P01033 207 aa19.12■□□□□ 0.65
USP39-201ENST00000323701 ADRA1BP35368 520 aa19.12■□□□□ 0.65
USP39-201ENST00000323701 LMNB2Q03252 620 aa19.12■□□□□ 0.65
USP39-201ENST00000323701 GPS1Q13098 491 aa19.12■□□□□ 0.65
USP39-201ENST00000323701 IZUMO3Q5VZ72 239 aa19.12■□□□□ 0.65
USP39-201ENST00000323701 ALS2CLQ60I27 953 aa19.12■□□□□ 0.65
USP39-201ENST00000323701 ARL8AQ96BM9 186 aa19.12■□□□□ 0.65
USP39-201ENST00000323701 LRRC45Q96CN5 670 aa19.12■□□□□ 0.65
USP39-201ENST00000323701 SH3GL2Q99962 352 aa19.12■□□□□ 0.65
USP39-201ENST00000323701 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.12■□□□□ 0.65
USP39-201ENST00000323701 LTBP2Q14767 1821 aa19.12■□□□□ 0.65
USP39-201ENST00000323701 ALDH7A1P49419 539 aaKnown RBP19.12■□□□□ 0.65
USP39-201ENST00000323701 NFE2Q16621 373 aaPredicted RBP19.12■□□□□ 0.65
USP39-201ENST00000323701 CCDC25Q86WR0 208 aa19.12■□□□□ 0.65
USP39-201ENST00000323701 SCML4Q8N228 414 aa19.12■□□□□ 0.65
USP39-201ENST00000323701 DQX1Q8TE96 717 aaKnown RBP19.12■□□□□ 0.65
USP39-201ENST00000323701 PGAP3Q96FM1 320 aaPredicted RBP19.12■□□□□ 0.65
USP39-201ENST00000323701 FUBP3Q96I24 572 aaKnown RBP eCLIP19.12■□□□□ 0.65
USP39-201ENST00000323701 TTPALQ9BTX7 342 aa19.12■□□□□ 0.65
USP39-201ENST00000323701 RC3H2Q9HBD1 1191 aaKnown RBP19.12■□□□□ 0.65
USP39-201ENST00000323701 ANAPC5Q9UJX4 755 aa19.12■□□□□ 0.65
USP39-201ENST00000323701 PCDHB5Q9Y5E4 795 aa19.12■□□□□ 0.65
USP39-201ENST00000323701 MTMR11A4FU01 709 aa19.11■□□□□ 0.65
USP39-201ENST00000323701 MCF2LO15068 1137 aa19.11■□□□□ 0.65
USP39-201ENST00000323701 CPB1P15086 417 aa19.11■□□□□ 0.65
USP39-201ENST00000323701 YWHAGP61981 247 aaKnown RBP eCLIP19.11■□□□□ 0.65
USP39-201ENST00000323701 NCBP2-AS2Q69YL0 99 aa19.11■□□□□ 0.65
USP39-201ENST00000323701 HIBCHQ6NVY1 386 aaPredicted RBP19.11■□□□□ 0.65
USP39-201ENST00000323701 VSIG1Q86XK7 387 aa19.11■□□□□ 0.65
USP39-201ENST00000323701 FAM204AQ9H8W3 233 aa19.11■□□□□ 0.65
USP39-201ENST00000323701 USP29Q9HBJ7 922 aa19.11■□□□□ 0.65
USP39-201ENST00000323701 ARHGEF4Q9NR80 690 aa19.11■□□□□ 0.65
USP39-201ENST00000323701 FBXW11Q9UKB1 542 aa19.11■□□□□ 0.65
USP39-201ENST00000323701 NR2E3Q9Y5X4 410 aa19.11■□□□□ 0.65
USP39-201ENST00000323701 OR6C75A6NL08 312 aa19.1■□□□□ 0.65
USP39-201ENST00000323701 CREB3O43889 395 aa19.1■□□□□ 0.65
USP39-201ENST00000323701 GBP1P32455 592 aa19.1■□□□□ 0.65
USP39-201ENST00000323701 RPL22P35268 128 aaKnown RBP19.1■□□□□ 0.65
USP39-201ENST00000323701 PMS2P54278 862 aa19.1■□□□□ 0.65
USP39-201ENST00000323701 GAD2Q05329 585 aa19.1■□□□□ 0.65
USP39-201ENST00000323701 TP53INP2Q8IXH6 220 aa19.1■□□□□ 0.65
USP39-201ENST00000323701 ZNF689Q96CS4 500 aaPredicted RBP19.1■□□□□ 0.65
USP39-201ENST00000323701 ACBD3Q9H3P7 528 aa19.1■□□□□ 0.65
USP39-201ENST00000323701 PCDH9Q9HC56 1237 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms