RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 PLLPQ9Y342 182 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 EME2A4GXA9 379 aaPredicted RBP10.87□□□□□ -0.67
COL3A1-202ENST00000317840 TRAFD1O14545 582 aaPredicted RBP10.87□□□□□ -0.67
COL3A1-202ENST00000317840 MSCO60682 206 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 LYPLA1O75608 230 aaPredicted RBP10.87□□□□□ -0.67
COL3A1-202ENST00000317840 STAG3L1P0CL83 205 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 ARL4AP40617 200 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 TUBP50607 506 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 ZNF143P52747 638 aaPredicted RBP10.87□□□□□ -0.67
COL3A1-202ENST00000317840 ENPEPQ07075 957 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 GOLGA7BQ2TAP0 167 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 RAB6CQ53S08 254 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 ARMCX2Q7L311 632 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 ACOT1Q86TX2 421 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 CDKL3Q8IVW4 592 aaPredicted RBP10.87□□□□□ -0.67
COL3A1-202ENST00000317840 DNAAF3Q8N9W5 541 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 STKLD1Q8NE28 680 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 ZNF483Q8TF39 744 aaPredicted RBP10.87□□□□□ -0.67
COL3A1-202ENST00000317840 RAB6CQ9H0N0 254 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 R3HDMLQ9H3Y0 253 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 ETNK2Q9NVF9 386 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 KANSL3Q9P2N6 904 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 TTLL3Q9Y4R7 772 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 PPP2R3BQ9Y5P8 575 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 NR2E3Q9Y5X4 410 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 LACTBL1A8MY62 500 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 CHADO15335 359 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 CFLARO15519 480 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 YBX3P16989 372 aaKnown RBP eCLIP10.87□□□□□ -0.67
COL3A1-202ENST00000317840 AP1B1Q10567 949 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 CUL3Q13618 768 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 AMHR2Q16671 573 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 TRMT5Q32P41 509 aaKnown RBP10.87□□□□□ -0.67
COL3A1-202ENST00000317840 NXNQ6DKJ4 435 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 METTL7BQ6UX53 244 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 CHSY1Q86X52 802 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 ULK2Q8IYT8 1036 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 EFCAB3Q8N7B9 438 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 TSNARE1Q96NA8 513 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 NT5C1AQ9BXI3 368 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 ZNF212Q9UDV6 495 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 FETUBQ9UGM5 382 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 CNTN6Q9UQ52 1028 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 NUMBLQ9Y6R0 609 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 UBR3Q6ZT12 1888 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 SOWAHBA6NEL2 793 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 A8MXQ7 604 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 MAFO75444 373 aaPredicted RBP10.87□□□□□ -0.67
COL3A1-202ENST00000317840 TGDSO95455 350 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 RARBP10826 455 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 LCP1P13796 627 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 ADORA2BP29275 332 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 TRIP10Q15642 601 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 N4BP2L1Q5TBK1 243 aaPredicted RBP10.87□□□□□ -0.67
COL3A1-202ENST00000317840 JADE1Q6IE81 842 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 CES3Q6UWW8 571 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 FAM183BPQ6ZVS7 135 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 CCNJLQ8IV13 435 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 PLD5Q8N7P1 536 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 GSTCDQ8NEC7 633 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 GSDMBQ8TAX9 411 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 FNIP1Q8TF40 1166 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 KIF12Q96FN5 646 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 EBF4Q9BQW3 602 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 ELOVL4Q9GZR5 314 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 SMYD2Q9NRG4 433 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 SETD4Q9NVD3 440 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 KLK14Q9P0G3 267 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 CPSF3Q9UKF6 684 aaKnown RBP10.87□□□□□ -0.67
COL3A1-202ENST00000317840 TEX264Q9Y6I9 313 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 BRWD3Q6RI45 1802 aa10.87□□□□□ -0.67
COL3A1-202ENST00000317840 ACKR2O00590 384 aa10.86□□□□□ -0.67
COL3A1-202ENST00000317840 CXCL11O14625 94 aa10.86□□□□□ -0.67
COL3A1-202ENST00000317840 TNPO2O14787 897 aaKnown RBP10.86□□□□□ -0.67
COL3A1-202ENST00000317840 HSPA4LO95757 839 aa10.86□□□□□ -0.67
COL3A1-202ENST00000317840 PIGRP01833 764 aa10.86□□□□□ -0.67
COL3A1-202ENST00000317840 HOXC6P09630 235 aa10.86□□□□□ -0.67
COL3A1-202ENST00000317840 C6orf222P0C671 652 aaPredicted RBP10.86□□□□□ -0.67
COL3A1-202ENST00000317840 VDRP11473 427 aa10.86□□□□□ -0.67
COL3A1-202ENST00000317840 PHKA2P46019 1235 aa10.86□□□□□ -0.67
COL3A1-202ENST00000317840 CCNG1P51959 295 aa10.86□□□□□ -0.67
COL3A1-202ENST00000317840 TMEM132DQ14C87 1099 aa10.86□□□□□ -0.67
COL3A1-202ENST00000317840 ISLR2Q6UXK2 745 aa10.86□□□□□ -0.67
COL3A1-202ENST00000317840 UNC5AQ6ZN44 842 aa10.86□□□□□ -0.67
COL3A1-202ENST00000317840 TREML1Q86YW5 311 aa10.86□□□□□ -0.67
COL3A1-202ENST00000317840 RIOX2Q8IUF8 465 aa10.86□□□□□ -0.67
COL3A1-202ENST00000317840 DNERQ8NFT8 737 aa10.86□□□□□ -0.67
COL3A1-202ENST00000317840 CMASQ8NFW8 434 aaPredicted RBP10.86□□□□□ -0.67
COL3A1-202ENST00000317840 FBXO27Q8NI29 283 aa10.86□□□□□ -0.67
COL3A1-202ENST00000317840 SH3TC2Q8TF17 1288 aa10.86□□□□□ -0.67
COL3A1-202ENST00000317840 WDR83Q9BRX9 315 aaKnown RBP10.86□□□□□ -0.67
COL3A1-202ENST00000317840 SOX13Q9UN79 622 aa10.86□□□□□ -0.67
COL3A1-202ENST00000317840 MYO18AQ92614 2054 aaKnown RBP10.86□□□□□ -0.67
COL3A1-202ENST00000317840 CREB3O43889 395 aa10.86□□□□□ -0.67
COL3A1-202ENST00000317840 CSH1P0DML2 217 aa10.86□□□□□ -0.67
COL3A1-202ENST00000317840 CSH2P0DML3 217 aa10.86□□□□□ -0.67
COL3A1-202ENST00000317840 ANPEPP15144 967 aa10.86□□□□□ -0.67
COL3A1-202ENST00000317840 PTPN7P35236 360 aa10.86□□□□□ -0.67
COL3A1-202ENST00000317840 COPAP53621 1224 aa10.86□□□□□ -0.67
COL3A1-202ENST00000317840 ATXN3P54252 364 aaPredicted RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms