RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 DDIT4Q9NX09 232 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 OGTO15294 1046 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 CHRNA5P30532 468 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 PNPLA4P41247 253 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 TTLL9Q3SXZ7 439 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 EFCAB12Q6NXP0 572 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 SLFN11Q7Z7L1 901 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 SNX32Q86XE0 403 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 HMG20AQ9NP66 347 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 CYBBP04839 570 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 DRD4P21917 467 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 RPA3P35244 121 aaPredicted RBP17.81■□□□□ 0.44
SYNPO-201ENST00000307662 Q4G0T1 1027 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 OTUD3Q5T2D3 398 aaPredicted RBP17.81■□□□□ 0.44
SYNPO-201ENST00000307662 C11orf74Q86VG3 221 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 ABRAQ8N0Z2 381 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 OR6J1Q8NGC5 347 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 FAM151AQ8WW52 585 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 DPP3Q9NY33 737 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 STK39Q9UEW8 545 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 AP4E1Q9UPM8 1137 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 ASMTLO95671 621 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 TCF3P15923 654 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 GP5P40197 560 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 ORC1Q13415 861 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 FASTKQ14296 549 aaKnown RBP17.81■□□□□ 0.44
SYNPO-201ENST00000307662 RRP1BQ14684 758 aaKnown RBP17.81■□□□□ 0.44
SYNPO-201ENST00000307662 SNX17Q15036 470 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 DHRSXQ8N5I4 330 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 C1orf50Q9BV19 199 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 DNAJC18Q9H819 358 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 ZNF70Q9UC06 446 aaPredicted RBP17.81■□□□□ 0.44
SYNPO-201ENST00000307662 LRRC10BA6NIK2 292 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 DPYSL4O14531 572 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 MFN2O95140 757 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 ARHGEF7Q14155 803 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 TRIM71Q2Q1W2 868 aaKnown RBP17.81■□□□□ 0.44
SYNPO-201ENST00000307662 TMEM26Q6ZUK4 368 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 MARK2Q7KZI7 788 aaKnown RBP17.81■□□□□ 0.44
SYNPO-201ENST00000307662 COLGALT1Q8NBJ5 622 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 GPRASP2Q96D09 838 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 ROGDIQ9GZN7 287 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 RERGLQ9H628 205 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 C2orf81A6NN90 581 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 MRASO14807 208 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 SREBF1P36956 1147 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 NPTX2P47972 431 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 FAAP100Q0VG06 881 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 SEZ6Q53EL9 994 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 FAM45BPQ6NSW5 357 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 CCDC149Q6ZUS6 474 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 TBC1D10AQ9BXI6 508 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 LRMDAQ9H2I8 198 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 TRPC7Q9HCX4 862 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 ACTL7BQ9Y614 415 aa17.81■□□□□ 0.44
SYNPO-201ENST00000307662 INPP4BO15327 924 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 ATP6V1C1P21283 382 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 GLRA4Q5JXX5 417 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 FAM120BQ96EK7 910 aaKnown RBP17.8■□□□□ 0.44
SYNPO-201ENST00000307662 OTUD5Q96G74 571 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 CRLS1Q9UJA2 301 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 JCADQ9P266 1359 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 MAGEB16A2A368 324 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 DCXO43602 365 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 SHBGP04278 402 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 ALDH1A3P47895 512 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 DDR1Q08345 913 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 C1DQ13901 141 aaKnown RBP17.8■□□□□ 0.44
SYNPO-201ENST00000307662 GSTA3Q16772 222 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 DDR2Q16832 855 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 RNF148Q8N7C7 305 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 VANGL2Q9ULK5 521 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 DIP2BQ9P265 1576 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 IL12RB1P42701 662 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 TAF6P49848 677 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 PURAQ00577 322 aaKnown RBP17.8■□□□□ 0.44
SYNPO-201ENST00000307662 AUHQ13825 339 aaKnown RBP17.8■□□□□ 0.44
SYNPO-201ENST00000307662 HIST2H2ACQ16777 129 aaPredicted RBP17.8■□□□□ 0.44
SYNPO-201ENST00000307662 HIST2H2AA3Q6FI13 130 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 TIGD7Q6NT04 549 aaPredicted RBP17.8■□□□□ 0.44
SYNPO-201ENST00000307662 EID3Q8N140 333 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 C2orf69Q8N8R5 385 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 GANQ9H2C0 597 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 SORCS3Q9UPU3 1222 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 NDUFAF1Q9Y375 327 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 A0A087X0B3 334 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 PNMA8CA0A1B0GUJ8 204 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 TPBGLP0DKB5 382 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 POU1F1P28069 291 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 SETD9Q8NE22 299 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 PIF1Q9H611 641 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 TPRKBQ9Y3C4 175 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 C19orf81C9J6K1 198 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 MZF1P28698 734 aaPredicted RBP17.8■□□□□ 0.44
SYNPO-201ENST00000307662 TTKP33981 857 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 NCALDP61601 193 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 WASHC5Q12768 1159 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 INAQ16352 499 aa17.8■□□□□ 0.44
SYNPO-201ENST00000307662 SAMD4BQ5PRF9 694 aaKnown RBP17.8■□□□□ 0.44
SYNPO-201ENST00000307662 CHSY1Q86X52 802 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms