RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 XRCC4Q13426 336 aa17.26■□□□□ 0.35
CCDC40-201ENST00000269318 STAT4Q14765 748 aa17.26■□□□□ 0.35
CCDC40-201ENST00000269318 NOMO2Q5JPE7 1267 aa17.26■□□□□ 0.35
CCDC40-201ENST00000269318 PM20D1Q6GTS8 502 aa17.26■□□□□ 0.35
CCDC40-201ENST00000269318 LRRC8DQ7L1W4 858 aa17.26■□□□□ 0.35
CCDC40-201ENST00000269318 CTU1Q7Z7A3 348 aaKnown RBP17.26■□□□□ 0.35
CCDC40-201ENST00000269318 COLGALT2Q8IYK4 626 aa17.26■□□□□ 0.35
CCDC40-201ENST00000269318 ZBED8Q8IZ13 594 aa17.26■□□□□ 0.35
CCDC40-201ENST00000269318 PGAP3Q96FM1 320 aaPredicted RBP17.26■□□□□ 0.35
CCDC40-201ENST00000269318 SLC9A7Q96T83 725 aa17.26■□□□□ 0.35
CCDC40-201ENST00000269318 WDR6Q9NNW5 1121 aaKnown RBP17.26■□□□□ 0.35
CCDC40-201ENST00000269318 TMPRSS4Q9NRS4 437 aa17.26■□□□□ 0.35
CCDC40-201ENST00000269318 EURLQ9NYK6 297 aa17.26■□□□□ 0.35
CCDC40-201ENST00000269318 PCDHB8Q9UN66 801 aa17.26■□□□□ 0.35
CCDC40-201ENST00000269318 A0A087WUV0 522 aaPredicted RBP17.25■□□□□ 0.35
CCDC40-201ENST00000269318 ARHGEF37A1IGU5 675 aa17.25■□□□□ 0.35
CCDC40-201ENST00000269318 SRRM3A6NNA2 597 aaPredicted RBP17.25■□□□□ 0.35
CCDC40-201ENST00000269318 TMEM189-UBE2V1I3L0A0 370 aa17.25■□□□□ 0.35
CCDC40-201ENST00000269318 LTFP02788 710 aa17.25■□□□□ 0.35
CCDC40-201ENST00000269318 SELPP16109 830 aa17.25■□□□□ 0.35
CCDC40-201ENST00000269318 AMPD1P23109 780 aa17.25■□□□□ 0.35
CCDC40-201ENST00000269318 ARL4CP56559 192 aa17.25■□□□□ 0.35
CCDC40-201ENST00000269318 KCNJ11Q14654 390 aa17.25■□□□□ 0.35
CCDC40-201ENST00000269318 GPNMBQ14956 572 aa17.25■□□□□ 0.35
CCDC40-201ENST00000269318 MSS51Q4VC12 460 aa17.25■□□□□ 0.35
CCDC40-201ENST00000269318 FNBP1LQ5T0N5 605 aa17.25■□□□□ 0.35
CCDC40-201ENST00000269318 THEM5Q8N1Q8 247 aa17.25■□□□□ 0.35
CCDC40-201ENST00000269318 SCML4Q8N228 414 aa17.25■□□□□ 0.35
CCDC40-201ENST00000269318 TAB3Q8N5C8 712 aaPredicted RBP17.25■□□□□ 0.35
CCDC40-201ENST00000269318 WDR83Q9BRX9 315 aaKnown RBP17.25■□□□□ 0.35
CCDC40-201ENST00000269318 FTHL17Q9BXU8 183 aa17.25■□□□□ 0.35
CCDC40-201ENST00000269318 DMAP1Q9NPF5 467 aaPredicted RBP17.25■□□□□ 0.35
CCDC40-201ENST00000269318 ETNK2Q9NVF9 386 aa17.25■□□□□ 0.35
CCDC40-201ENST00000269318 PAK5Q9P286 719 aa17.25■□□□□ 0.35
CCDC40-201ENST00000269318 CTNNAL1Q9UBT7 734 aa17.25■□□□□ 0.35
CCDC40-201ENST00000269318 LGALS13Q9UHV8 139 aa17.25■□□□□ 0.35
CCDC40-201ENST00000269318 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.25■□□□□ 0.35
CCDC40-201ENST00000269318 NLRC5Q86WI3 1866 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 ARL4AP40617 200 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 BASP1P80723 227 aaKnown RBP17.24■□□□□ 0.35
CCDC40-201ENST00000269318 NME3Q13232 169 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 ARHGEF6Q15052 776 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 MAPRE1Q15691 268 aaKnown RBP17.24■□□□□ 0.35
CCDC40-201ENST00000269318 SLC45A4Q5BKX6 768 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 HP1BP3Q5SSJ5 553 aaPredicted RBP17.24■□□□□ 0.35
CCDC40-201ENST00000269318 EXOC3L1Q86VI1 746 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 CDKL3Q8IVW4 592 aaPredicted RBP17.24■□□□□ 0.35
CCDC40-201ENST00000269318 CCDC13Q8IYE1 715 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 SLC7A14Q8TBB6 771 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 IRGQQ8WZA9 623 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 NTAN1Q96AB6 310 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 OLFM3Q96PB7 478 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.24■□□□□ 0.35
CCDC40-201ENST00000269318 PRDM16Q9HAZ2 1276 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 PNPLA8Q9NP80 782 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 ARHGEF4Q9NR80 690 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 TBC1D13Q9NVG8 400 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 DTLQ9NZJ0 730 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 XPO7Q9UIA9 1087 aaKnown RBP17.24■□□□□ 0.35
CCDC40-201ENST00000269318 ZMYND8Q9ULU4 1186 aaPredicted RBP17.24■□□□□ 0.35
CCDC40-201ENST00000269318 MFHAS1Q9Y4C4 1052 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 SYNJ2BP-COX16A0A087WUM0 186 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 KBTBD13C9JR72 458 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 CAPN9O14815 690 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 NBNO60934 754 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 BANF1O75531 89 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 IVLP07476 585 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 NCAM1P13591 858 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 AIF1P55008 147 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 HNRNPH2P55795 449 aaKnown RBP17.24■□□□□ 0.35
CCDC40-201ENST00000269318 SCAPQ12770 1279 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 CBLBQ13191 982 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 FOXR1Q6PIV2 292 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 FAM126BQ8IXS8 530 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 URGCPQ8TCY9 931 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 RNF139Q8WU17 664 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 LRRN4Q8WUT4 740 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 QKIQ96PU8 341 aaKnown RBP eCLIP17.24■□□□□ 0.35
CCDC40-201ENST00000269318 EPN3Q9H201 632 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 ANLNQ9NQW6 1124 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 RRN3Q9NYV6 651 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 COX16Q9P0S2 106 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 PTPRDP23468 1912 aa17.24■□□□□ 0.35
CCDC40-201ENST00000269318 CLUHO75153 1309 aa17.23■□□□□ 0.35
CCDC40-201ENST00000269318 I6L893 689 aaPredicted RBP17.23■□□□□ 0.35
CCDC40-201ENST00000269318 CHADO15335 359 aa17.23■□□□□ 0.35
CCDC40-201ENST00000269318 CDH16O75309 829 aa17.23■□□□□ 0.35
CCDC40-201ENST00000269318 DGKIO75912 1065 aa17.23■□□□□ 0.35
CCDC40-201ENST00000269318 GCAP28676 217 aa17.23■□□□□ 0.35
CCDC40-201ENST00000269318 ADRA1BP35368 520 aa17.23■□□□□ 0.35
CCDC40-201ENST00000269318 TSPY1Q01534 308 aa17.23■□□□□ 0.35
CCDC40-201ENST00000269318 PPARDQ03181 441 aa17.23■□□□□ 0.35
CCDC40-201ENST00000269318 YWHAHQ04917 246 aaPredicted RBP17.23■□□□□ 0.35
CCDC40-201ENST00000269318 KCNT2Q6UVM3 1135 aa17.23■□□□□ 0.35
CCDC40-201ENST00000269318 MDM1Q8TC05 714 aa17.23■□□□□ 0.35
CCDC40-201ENST00000269318 ADAM32Q8TC27 787 aa17.23■□□□□ 0.35
CCDC40-201ENST00000269318 BCAS4Q8TDM0 211 aa17.23■□□□□ 0.35
CCDC40-201ENST00000269318 CCDC77Q9BR77 488 aa17.23■□□□□ 0.35
CCDC40-201ENST00000269318 SEZ6LQ9BYH1 1024 aa17.23■□□□□ 0.35
CCDC40-201ENST00000269318 TMEM161AQ9NX61 479 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms