RNA–Protein interactions for RNA: ENST00000218348.7

USP11-201, Transcript of ubiquitin specific peptidase 11, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP11, Length 3,338 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-201ENST00000218348 AMPD1P23109 780 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 MMP13P45452 471 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 ROR1Q01973 937 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 DPYSL3Q14195 570 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 ARHGEF6Q15052 776 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 RNASEH2BQ5TBB1 312 aaKnown RBP10.35□□□□□ -0.75
USP11-201ENST00000218348 OLFML1Q6UWY5 402 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 FAM228AQ86W67 206 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 IFNLR1Q8IU57 520 aaPredicted RBP10.35□□□□□ -0.75
USP11-201ENST00000218348 IGDCC3Q8IVU1 814 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 PARP9Q8IXQ6 854 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 PALM2Q8IXS6 379 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 RBM12BQ8IXT5 1001 aaKnown RBP10.35□□□□□ -0.75
USP11-201ENST00000218348 ZCCHC9Q8N567 271 aaKnown RBP10.35□□□□□ -0.75
USP11-201ENST00000218348 FBXO36Q8NEA4 188 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 SLC35B2Q8TB61 432 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 KBTBD7Q8WVZ9 684 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 FAF2Q96CS3 445 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 PCDH10Q9P2E7 1040 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 COL1A2P08123 1366 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 DYTNA2CJ06 578 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 F7P08709 466 aaPredicted RBP10.35□□□□□ -0.75
USP11-201ENST00000218348 NEFHP12036 1026 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 FUT4P22083 530 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 STX2P32856 288 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 CDK7P50613 346 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 SCNN1GP51170 649 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 HDAC4P56524 1084 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 LILRA4P59901 499 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 SLC6A3Q01959 620 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 LMNB2Q03252 620 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 POU5F1BQ06416 359 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 FAM133BQ5BKY9 247 aaKnown RBP10.35□□□□□ -0.75
USP11-201ENST00000218348 ERMARDQ5T6L9 678 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 LRRC38Q5VT99 294 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 BBS12Q6ZW61 710 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 TAOK1Q7L7X3 1001 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 PIGZQ86VD9 579 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 CTAGE3PQ8IX95 158 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 TP53INP2Q8IXH6 220 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 CACNA2D3Q8IZS8 1091 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 SMG8Q8ND04 991 aaKnown RBP10.35□□□□□ -0.75
USP11-201ENST00000218348 CCDC77Q9BR77 488 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 TSEN34Q9BSV6 310 aaKnown RBP10.35□□□□□ -0.75
USP11-201ENST00000218348 MIOSQ9NXC5 875 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 UBQLN1Q9UMX0 589 aaKnown RBP10.35□□□□□ -0.75
USP11-201ENST00000218348 ST3GAL5Q9UNP4 418 aa10.35□□□□□ -0.75
USP11-201ENST00000218348 COL4A6Q14031 1691 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 SMIM35A0A1B0GVV1 85 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 THPOP40225 353 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 CPT1AP50416 773 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 CLCNKBP51801 687 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 CRADDP78560 199 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 INCA1Q0VD86 236 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 UBXN11Q5T124 520 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 GDF6Q6KF10 455 aaPredicted RBP10.34□□□□□ -0.75
USP11-201ENST00000218348 TRAF7Q6Q0C0 670 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 VSTM1Q6UX27 236 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 HFE2Q6ZVN8 426 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 SYDE1Q6ZW31 735 aaPredicted RBP10.34□□□□□ -0.75
USP11-201ENST00000218348 CYP4V2Q6ZWL3 525 aaPredicted RBP10.34□□□□□ -0.75
USP11-201ENST00000218348 CENPUQ71F23 418 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 PCDH19Q8TAB3 1148 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 FAM81AQ8TBF8 368 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 SLC35F5Q8WV83 523 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 EDEM1Q92611 657 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 PRCCQ92733 491 aaPredicted RBP10.34□□□□□ -0.75
USP11-201ENST00000218348 KHSRPQ92945 711 aaKnown RBP eCLIP10.34□□□□□ -0.75
USP11-201ENST00000218348 TBCBQ99426 244 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 FAM129AQ9BZQ8 928 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 MAD1L1Q9Y6D9 718 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 FAM155BO75949 473 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 ZBED1O96006 694 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 DRD4P21917 467 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 GJA8P48165 433 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 TAF6P49848 677 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 GKAP1Q5VSY0 366 aaPredicted RBP10.34□□□□□ -0.75
USP11-201ENST00000218348 CAPRIN2Q6IMN6 1127 aaKnown RBP10.34□□□□□ -0.75
USP11-201ENST00000218348 PPP1R2P3Q6NXS1 205 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 DEFB106AQ8N104 65 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 NIPA2Q8N8Q9 360 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 FBF1Q8TES7 1133 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 ATXN2LQ8WWM7 1075 aaKnown RBP10.34□□□□□ -0.75
USP11-201ENST00000218348 XPNPEP3Q9NQH7 507 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 NUDT5Q9UKK9 219 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 SNX10Q9Y5X0 201 aa10.34□□□□□ -0.75
USP11-201ENST00000218348 PTGESO14684 152 aa10.33□□□□□ -0.76
USP11-201ENST00000218348 GOT1P17174 413 aa10.33□□□□□ -0.76
USP11-201ENST00000218348 GRIA1P42261 906 aa10.33□□□□□ -0.76
USP11-201ENST00000218348 KCNA10Q16322 511 aa10.33□□□□□ -0.76
USP11-201ENST00000218348 C1orf53Q5VUE5 145 aa10.33□□□□□ -0.76
USP11-201ENST00000218348 CCDC121Q6ZUS5 278 aa10.33□□□□□ -0.76
USP11-201ENST00000218348 PLD5Q8N7P1 536 aa10.33□□□□□ -0.76
USP11-201ENST00000218348 CCNYQ8ND76 341 aa10.33□□□□□ -0.76
USP11-201ENST00000218348 CMASQ8NFW8 434 aaPredicted RBP10.33□□□□□ -0.76
USP11-201ENST00000218348 AGO3Q9H9G7 860 aaKnown RBP10.33□□□□□ -0.76
USP11-201ENST00000218348 PCDH9Q9HC56 1237 aa10.33□□□□□ -0.76
USP11-201ENST00000218348 PCDH18Q9HCL0 1135 aa10.33□□□□□ -0.76
USP11-201ENST00000218348 HMX1Q9NP08 348 aaPredicted RBP10.33□□□□□ -0.76
USP11-201ENST00000218348 TTC3P53804 2025 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms