RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 ADGRB2O60241 1585 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 SOS2Q07890 1332 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-216ENST00000637968 SALL1Q9NSC2 1324 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 ZMYM2Q9UBW7 1377 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 TTC37Q6PGP7 1564 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 RNF103-CHMP3A0A140T963 221 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 C6orf229H3BNL8 230 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 E2F3O00716 465 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 CCNT2O60583 730 aaKnown RBP5.92□□□□□ -1.46
SCN1A-216ENST00000637968 KPNA6O60684 536 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 CLPXO76031 633 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 TGFB3P10600 412 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 MAPKAPK2P49137 400 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 BMXP51813 675 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 MAPK10P53779 464 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 NME3Q13232 169 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 ZNF211Q13398 564 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-216ENST00000637968 KCTD2Q14681 263 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 UBE3CQ15386 1083 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 NPTX1Q15818 432 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 FAM83BQ5T0W9 1011 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 FAM205BPQ63HN1 556 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 KYAT3Q6YP21 454 aaKnown RBP5.92□□□□□ -1.46
SCN1A-216ENST00000637968 RNF207Q6ZRF8 634 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 C16orf62Q7Z3J2 963 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 GPR180Q86V85 440 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 ZSCAN29Q8IWY8 852 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-216ENST00000637968 FANK1Q8TC84 345 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 MAP6Q96JE9 813 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 RMDN3Q96TC7 470 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 ING2Q9H160 280 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 ALG13Q9NP73 1137 aaKnown RBP5.92□□□□□ -1.46
SCN1A-216ENST00000637968 ABCB10Q9NRK6 738 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 TMEM9Q9P0T7 183 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.92□□□□□ -1.46
SCN1A-216ENST00000637968 PCDHGA10Q9Y5H3 936 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 ST14Q9Y5Y6 855 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 ZHX2Q9Y6X8 837 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 PMF1-BGLAPU3KQ54 211 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 MED23Q9ULK4 1368 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 UGGT1Q9NYU2 1555 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 PRSS44E7EML9 344 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 RGS13O14921 159 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 ZNF263O14978 683 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 LPXNO60711 386 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 SNAP29O95721 258 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 KRT1P04264 644 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 HMGN1P05114 100 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 SERPINB2P05120 415 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 YES1P07947 543 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 CCND2P30279 289 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 HTR2BP41595 481 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 PRKCIP41743 596 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 MLLT6P55198 1093 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-216ENST00000637968 SRP54P61011 504 aaKnown RBP5.91□□□□□ -1.46
SCN1A-216ENST00000637968 S100A12P80511 92 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 COASYQ13057 564 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 DNASE1L3Q13609 305 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 ABCB5Q2M3G0 1257 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 AARS2Q5JTZ9 985 aaKnown RBP5.91□□□□□ -1.46
SCN1A-216ENST00000637968 KCNT1Q5JUK3 1230 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 PHC2Q8IXK0 858 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 SEPT12Q8IYM1 358 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 CADM3Q8N126 398 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 METTL25Q8N6Q8 603 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 SIMC1Q8NDZ2 872 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 OR5H6Q8NGV6 325 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 SYTL5Q8TDW5 730 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-216ENST00000637968 SLC9A6Q92581 669 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 SYN2Q92777 582 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-216ENST00000637968 FBXO6Q9NRD1 293 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-216ENST00000637968 SLC39A1Q9NY26 324 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 HEMK1Q9Y5R4 338 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-216ENST00000637968 KCNE2Q9Y6J6 123 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 I3L521 148 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 KIAA0391O15091 583 aaKnown RBP5.91□□□□□ -1.46
SCN1A-216ENST00000637968 CYP26A1O43174 497 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 CALUO43852 315 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-216ENST00000637968 TNFRSF21O75509 655 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 PRKD3O94806 890 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 KITP10721 976 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 GSTM2P28161 218 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 IL12AP29459 219 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 ECHS1P30084 290 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 BTDP43251 543 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 OR3A3P47888 321 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 AP3B2Q13367 1082 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 TRAPPC3LQ5T215 181 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 NANOGP8Q6NSW7 305 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 CCBE1Q6UXH8 406 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-216ENST00000637968 SLC22A16Q86VW1 577 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 ARHGEF19Q8IW93 802 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 KBTBD3Q8NAB2 608 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 SGK3Q96BR1 496 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 MROQ9BYG7 248 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 UPF3AQ9H1J1 476 aaKnown RBP5.91□□□□□ -1.46
SCN1A-216ENST00000637968 SLC6A15Q9H2J7 730 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 TRIT1Q9H3H1 467 aaKnown RBP5.91□□□□□ -1.46
SCN1A-216ENST00000637968 COPS7BQ9H9Q2 264 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-216ENST00000637968 SAYSD1Q9NPB0 183 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms