RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 MEIS3P2A8K0S8 358 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 AGAP14A8MT82 685 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 B4E1Z4 1266 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 H7BY64 318 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 RNF103O00237 685 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 E2F3O00716 465 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 SH2B2O14492 632 aaPredicted RBP3.18□□□□□ -1.9
VIM-210ENST00000637053 PGRMC2O15173 223 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 YKT6O15498 198 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 SLC25A17O43808 307 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 EXOC3O60645 756 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 PLA2G6O60733 806 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 PHF2O75151 1096 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 TSPAN9O75954 239 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 KRT34O76011 436 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 PRAMEF1O95521 474 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 RB1P06400 928 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 DBHP09172 617 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 RARBP10826 455 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 EPB41P11171 864 aaKnown RBP3.18□□□□□ -1.9
VIM-210ENST00000637053 RARGP13631 454 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 YY1P25490 414 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 CIITAP33076 1130 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 HNF1BP35680 557 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 SERPINF1P36955 418 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 MLH1P40692 756 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 OR1G1P47890 313 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 DNM2P50570 870 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 STAT5BP51692 787 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 RPS6KA3P51812 740 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 KPNA1P52294 538 aaPredicted RBP3.18□□□□□ -1.9
VIM-210ENST00000637053 AGFG1P52594 562 aaKnown RBP3.18□□□□□ -1.9
VIM-210ENST00000637053 VCPP55072 806 aaKnown RBP3.18□□□□□ -1.9
VIM-210ENST00000637053 ADKP55263 362 aaKnown RBP3.18□□□□□ -1.9
VIM-210ENST00000637053 SCAND1P57086 179 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 GMFBP60983 142 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 MRPS5P82675 430 aaKnown RBP3.18□□□□□ -1.9
VIM-210ENST00000637053 MRPS15P82914 257 aaKnown RBP3.18□□□□□ -1.9
VIM-210ENST00000637053 DR1Q01658 176 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 PRKCZQ05513 592 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 EXOSC9Q06265 439 aaKnown RBP3.18□□□□□ -1.9
VIM-210ENST00000637053 PPIDQ08752 370 aaKnown RBP3.18□□□□□ -1.9
VIM-210ENST00000637053 RALGDSQ12967 914 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 STK4Q13043 487 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 MTX1Q13505 466 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 RIPK1Q13546 671 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 BYSLQ13895 437 aaKnown RBP3.18□□□□□ -1.9
VIM-210ENST00000637053 GALNT3Q14435 633 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 HABP2Q14520 560 aaPredicted RBP3.18□□□□□ -1.9
VIM-210ENST00000637053 EFTUD2Q15029 972 aaKnown RBP eCLIP3.18□□□□□ -1.96e-12■■■■■ 89.3
VIM-210ENST00000637053 POLD3Q15054 466 aaPredicted RBP3.18□□□□□ -1.9
VIM-210ENST00000637053 DPYSL2Q16555 572 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 HADHQ16836 314 aaKnown RBP3.18□□□□□ -1.9
VIM-210ENST00000637053 AAK1Q2M2I8 961 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 SLC35G1Q2M3R5 365 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 LRIT3Q3SXY7 679 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 ANO6Q4KMQ2 910 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 TDRD12Q587J7 1177 aaKnown RBP3.18□□□□□ -1.9
VIM-210ENST00000637053 HSP90AA5PQ58FG0 334 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 FAM26FQ5R3K3 315 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 SLC9C2Q5TAH2 1124 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 ATPAF1Q5TC12 328 aaPredicted RBP3.18□□□□□ -1.9
VIM-210ENST00000637053 KLHDC7AQ5VTJ3 777 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 KANK2Q63ZY3 851 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 CENPPQ6IPU0 288 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 SLC25A24Q6NUK1 477 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 NEK5Q6P3R8 708 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 MTFR2Q6P444 385 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 ZNF600Q6ZNG1 722 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 PTCHD4Q6ZW05 846 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 SZRD1Q7Z422 152 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 R3HCC1LQ7Z5L2 792 aaKnown RBP3.18□□□□□ -1.9
VIM-210ENST00000637053 GLRX5Q86SX6 157 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 TTC7BQ86TV6 843 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 ADCK1Q86TW2 530 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 SESTD1Q86VW0 696 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 ZNF575Q86XF7 245 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 COL23A1Q86Y22 540 aaPredicted RBP3.18□□□□□ -1.9
VIM-210ENST00000637053 C2CD5Q86YS7 1000 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 RIOX2Q8IUF8 465 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 WDR49Q8IV35 697 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 HERC6Q8IVU3 1022 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 NKAIN4Q8IVV8 208 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 CMIPQ8IY22 773 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 SCYL3Q8IZE3 742 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 OR10H5Q8NGA6 315 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 SPATA20Q8TB22 786 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 DEPDC1BQ8WUY9 529 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 JADE3Q92613 823 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 PRAM1Q96QH2 718 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 SH3GL3Q99963 347 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 ASCC2Q9H1I8 757 aaPredicted RBP3.18□□□□□ -1.9
VIM-210ENST00000637053 ISCUQ9H1K1 167 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 MIR1-1HGQ9H1L0 117 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 SERHL2Q9H4I8 314 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 PRDM13Q9H4Q3 707 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 NRDE2Q9H7Z3 1164 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 PHAXQ9H814 394 aaKnown RBP3.18□□□□□ -1.9
VIM-210ENST00000637053 ZMAT3Q9HA38 289 aaKnown RBP3.18□□□□□ -1.9
VIM-210ENST00000637053 EIF2B3Q9NR50 452 aaKnown RBP3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms