RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 UBAP1Q9NZ09 502 aa14.62□□□□□ -0.07
LDB3-209ENST00000623056 APOBEC2Q9Y235 224 aaKnown RBP14.62□□□□□ -0.07
LDB3-209ENST00000623056 CCDC160A6NGH7 325 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 DENRO43583 198 aaKnown RBP14.61□□□□□ -0.07
LDB3-209ENST00000623056 KRT38O76015 456 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 CCDC166P0CW27 439 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 YY1P25490 414 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 PMLP29590 882 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 ALDH1A3P47895 512 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 ZNF394Q53GI3 561 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 ZBTB41Q5SVQ8 909 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 C1orf228Q6PIY5 440 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 NPNTQ6UXI9 565 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 FAM160B2Q86V87 743 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 RTKN2Q8IZC4 609 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 DEFB107AQ8IZN7 70 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 HAPLN2Q9GZV7 340 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 RBM38Q9H0Z9 239 aaKnown RBP14.61□□□□□ -0.07
LDB3-209ENST00000623056 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.61□□□□□ -0.07
LDB3-209ENST00000623056 PCSK1NQ9UHG2 260 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 LZTS1Q9Y250 596 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 A0A0J9YVX5 310 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 HMX2A2RU54 273 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 TRDMT1O14717 391 aaKnown RBP14.61□□□□□ -0.07
LDB3-209ENST00000623056 EIF2AK2P19525 551 aaKnown RBP14.61□□□□□ -0.07
LDB3-209ENST00000623056 ITGAXP20702 1163 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 SFNP31947 248 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 TAF5Q15542 800 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 FASTKD1Q53R41 847 aaKnown RBP14.61□□□□□ -0.07
LDB3-209ENST00000623056 MROH9Q5TGP6 573 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 WDR78Q5VTH9 848 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 KLC3Q6P597 504 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 KBTBD6Q86V97 674 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 ADGRF2Q8IZF7 708 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 FBXW8Q8N3Y1 598 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 CLEC4DQ8WXI8 215 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 JDP2Q8WYK2 163 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 DCUN1D1Q96GG9 259 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 CGRRF1Q99675 332 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 STN1Q9H668 368 aaKnown RBP14.61□□□□□ -0.07
LDB3-209ENST00000623056 RAB6BQ9NRW1 208 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 PCDHGB4Q9UN71 923 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 PCDHGB5Q9Y5G0 923 aa14.61□□□□□ -0.07
LDB3-209ENST00000623056 KRT3P12035 628 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 PEX6Q13608 980 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 ACBD5Q5T8D3 534 aaPredicted RBP14.6□□□□□ -0.07
LDB3-209ENST00000623056 TEDDM1Q5T9Z0 273 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 MBLAC2Q68D91 279 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 MAVSQ7Z434 540 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 ZBTB45Q96K62 511 aaPredicted RBP14.6□□□□□ -0.07
LDB3-209ENST00000623056 NLRP4Q96MN2 994 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 CATSPER2Q96P56 530 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 CALN1Q9BXU9 219 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 GRIP2Q9C0E4 1043 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 XPNPEP1Q9NQW7 623 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 TJP2Q9UDY2 1190 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 H0YIN7 160 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 STRNO43815 780 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 DNAJA2O60884 412 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 ENTPD3O75355 529 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 ITGBL1O95965 494 aaPredicted RBP14.6□□□□□ -0.07
LDB3-209ENST00000623056 GSRP00390 522 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 APOEP02649 317 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 ICAM1P05362 532 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 DESP17661 470 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 KRT76Q01546 638 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 CBLBQ13191 982 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 DEFB132Q7Z7B7 95 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 RSPH3Q86UC2 560 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 TFB1MQ8WVM0 346 aaKnown RBP14.6□□□□□ -0.07
LDB3-209ENST00000623056 TFAP2BQ92481 460 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 HSPH1Q92598 858 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 MRPS26Q9BYN8 205 aaKnown RBP14.6□□□□□ -0.07
LDB3-209ENST00000623056 ZNF518BQ9C0D4 1074 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 ZNF510Q9Y2H8 683 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 ZBTB12Q9Y330 459 aaPredicted RBP14.6□□□□□ -0.07
LDB3-209ENST00000623056 STYXL1Q9Y6J8 313 aa14.6□□□□□ -0.07
LDB3-209ENST00000623056 PLA2G6O60733 806 aa14.59□□□□□ -0.07
LDB3-209ENST00000623056 CDK4P11802 303 aa14.59□□□□□ -0.07
LDB3-209ENST00000623056 MYCLP12524 364 aaPredicted RBP14.59□□□□□ -0.07
LDB3-209ENST00000623056 OSBPP22059 807 aa14.59□□□□□ -0.07
LDB3-209ENST00000623056 CDH5P33151 784 aaPredicted RBP14.59□□□□□ -0.07
LDB3-209ENST00000623056 SLC1A6P48664 564 aa14.59□□□□□ -0.07
LDB3-209ENST00000623056 IDH3AP50213 366 aa14.59□□□□□ -0.07
LDB3-209ENST00000623056 NOMO1Q15155 1222 aa14.59□□□□□ -0.07
LDB3-209ENST00000623056 MYLK3Q32MK0 819 aa14.59□□□□□ -0.07
LDB3-209ENST00000623056 FAXCQ5TGI0 409 aa14.59□□□□□ -0.07
LDB3-209ENST00000623056 CAND1Q86VP6 1230 aaKnown RBP14.59□□□□□ -0.07
LDB3-209ENST00000623056 EMC1Q8N766 993 aa14.59□□□□□ -0.07
LDB3-209ENST00000623056 ZFP28Q8NHY6 868 aa14.59□□□□□ -0.07
LDB3-209ENST00000623056 IRGQQ8WZA9 623 aa14.59□□□□□ -0.07
LDB3-209ENST00000623056 CMTM5Q96DZ9 223 aa14.59□□□□□ -0.07
LDB3-209ENST00000623056 ZFRQ96KR1 1074 aaKnown RBP14.59□□□□□ -0.07
LDB3-209ENST00000623056 POLR3FQ9H1D9 316 aaPredicted RBP14.59□□□□□ -0.07
LDB3-209ENST00000623056 NRDE2Q9H7Z3 1164 aa14.59□□□□□ -0.07
LDB3-209ENST00000623056 GABBR1Q9UBS5 961 aa14.59□□□□□ -0.07
LDB3-209ENST00000623056 FEM1BQ9UK73 627 aa14.59□□□□□ -0.07
LDB3-209ENST00000623056 LOC100653049A0A140TA62 436 aa14.59□□□□□ -0.07
LDB3-209ENST00000623056 KRT34O76011 436 aa14.59□□□□□ -0.07
LDB3-209ENST00000623056 FGF3P11487 239 aaPredicted RBP14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms