RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 YAF2Q8IY57 180 aa14.36□□□□□ -0.11
CIITA-213ENST00000618327 TOP6BLQ8N6T0 577 aa14.36□□□□□ -0.11
CIITA-213ENST00000618327 ZNF669Q96BR6 464 aaPredicted RBP14.36□□□□□ -0.11
CIITA-213ENST00000618327 LCA5LO95447 670 aa14.36□□□□□ -0.11
CIITA-213ENST00000618327 CHN1P15882 459 aa14.36□□□□□ -0.11
CIITA-213ENST00000618327 NOS2P35228 1153 aa14.36□□□□□ -0.11
CIITA-213ENST00000618327 CCNYL1Q8N7R7 359 aa14.36□□□□□ -0.11
CIITA-213ENST00000618327 SLAIN1Q8ND83 568 aa14.36□□□□□ -0.11
CIITA-213ENST00000618327 BHMTQ93088 406 aa14.36□□□□□ -0.11
CIITA-213ENST00000618327 TUBB6Q9BUF5 446 aa14.36□□□□□ -0.11
CIITA-213ENST00000618327 C20orf96Q9NUD7 363 aaPredicted RBP14.36□□□□□ -0.11
CIITA-213ENST00000618327 LRP5O75197 1615 aa14.36□□□□□ -0.11
CIITA-213ENST00000618327 ADGRA3Q8IWK6 1321 aa14.36□□□□□ -0.11
CIITA-213ENST00000618327 H0Y626 953 aa14.36□□□□□ -0.11
CIITA-213ENST00000618327 NCAM2O15394 837 aa14.36□□□□□ -0.11
CIITA-213ENST00000618327 NCF2P19878 526 aaPredicted RBP14.36□□□□□ -0.11
CIITA-213ENST00000618327 KDELR1P24390 212 aa14.36□□□□□ -0.11
CIITA-213ENST00000618327 KPNA1P52294 538 aaPredicted RBP14.36□□□□□ -0.11
CIITA-213ENST00000618327 CDH18Q13634 790 aa14.36□□□□□ -0.11
CIITA-213ENST00000618327 LAMB3Q13751 1172 aa14.36□□□□□ -0.11
CIITA-213ENST00000618327 ANKRD20A4Q4UJ75 823 aa14.36□□□□□ -0.11
CIITA-213ENST00000618327 ANKRD20A8PQ5CZ79 823 aa14.36□□□□□ -0.11
CIITA-213ENST00000618327 ANKRD20A2Q5SQ80 823 aa14.36□□□□□ -0.11
CIITA-213ENST00000618327 PPP1R26Q5T8A7 1209 aaPredicted RBP14.36□□□□□ -0.11
CIITA-213ENST00000618327 ANKRD20A1Q5TYW2 823 aa14.36□□□□□ -0.11
CIITA-213ENST00000618327 HES6Q96HZ4 224 aa14.36□□□□□ -0.11
CIITA-213ENST00000618327 DRC3Q9H069 523 aa14.36□□□□□ -0.11
CIITA-213ENST00000618327 CHST7Q9NS84 486 aa14.36□□□□□ -0.11
CIITA-213ENST00000618327 DDX20Q9UHI6 824 aaKnown RBP14.36□□□□□ -0.11
CIITA-213ENST00000618327 DNPEPQ9ULA0 475 aa14.36□□□□□ -0.11
CIITA-213ENST00000618327 G3BP2Q9UN86 482 aaKnown RBP14.36□□□□□ -0.11
CIITA-213ENST00000618327 DCTN3O75935 186 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 AMPD1P23109 780 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 MARCKSL1P49006 195 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 TIGD7Q6NT04 549 aaPredicted RBP14.35□□□□□ -0.11
CIITA-213ENST00000618327 DCLRE1AQ6PJP8 1040 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 CAVIN3Q969G5 261 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 SERPINB11Q96P15 392 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 EFHD1Q9BUP0 239 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 CDC42EP4Q9H3Q1 356 aaKnown RBP14.35□□□□□ -0.11
CIITA-213ENST00000618327 COQ4Q9Y3A0 265 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 NRAPQ86VF7 1730 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 PIGRP01833 764 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 SNRPAP09012 282 aaKnown RBP14.35□□□□□ -0.11
CIITA-213ENST00000618327 NSUN2Q08J23 767 aaKnown RBP eCLIP14.35□□□□□ -0.11
CIITA-213ENST00000618327 FRA10AC1Q70Z53 315 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 RASAL3Q86YV0 1011 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 RNF135Q8IUD6 432 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 FBXO36Q8NEA4 188 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 ZFP42Q96MM3 310 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 SERPINB12Q96P63 405 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 FAM47DPA6NHR8 397 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 APOC4-APOC2K7ER74 178 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 CILPO75339 1184 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 RTN3O95197 1032 aaPredicted RBP14.35□□□□□ -0.11
CIITA-213ENST00000618327 JCHAINP01591 159 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 APOC2P02655 101 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 TBX4P57082 545 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 GEMIN4P57678 1058 aaKnown RBP14.35□□□□□ -0.11
CIITA-213ENST00000618327 TWF1Q12792 350 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 TUSC3Q13454 348 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 KRT80Q6KB66 452 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 WNT8BQ93098 351 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 LHX5Q9H2C1 402 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 CHEK2O96017 543 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 ESRRAP11474 423 aaPredicted RBP14.35□□□□□ -0.11
CIITA-213ENST00000618327 SPRP35270 261 aaPredicted RBP14.35□□□□□ -0.11
CIITA-213ENST00000618327 RPL21P46778 160 aaKnown RBP14.35□□□□□ -0.11
CIITA-213ENST00000618327 TUFMP49411 452 aaKnown RBP14.35□□□□□ -0.11
CIITA-213ENST00000618327 GEMP55040 296 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.35□□□□□ -0.11
CIITA-213ENST00000618327 FASTKD1Q53R41 847 aaKnown RBP14.35□□□□□ -0.11
CIITA-213ENST00000618327 EFHBQ8N7U6 833 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 PRMT1Q99873 361 aaKnown RBP14.35□□□□□ -0.11
CIITA-213ENST00000618327 ALG13Q9NP73 1137 aaKnown RBP14.35□□□□□ -0.11
CIITA-213ENST00000618327 SIX2Q9NPC8 291 aa14.35□□□□□ -0.11
CIITA-213ENST00000618327 ADCY6O43306 1168 aa14.34□□□□□ -0.11
CIITA-213ENST00000618327 SNX2O60749 519 aa14.34□□□□□ -0.11
CIITA-213ENST00000618327 ATG7O95352 703 aa14.34□□□□□ -0.11
CIITA-213ENST00000618327 MMP8P22894 467 aa14.34□□□□□ -0.11
CIITA-213ENST00000618327 SLC10A6Q3KNW5 377 aa14.34□□□□□ -0.11
CIITA-213ENST00000618327 ATP13A4Q4VNC1 1196 aa14.34□□□□□ -0.11
CIITA-213ENST00000618327 SGSM3Q96HU1 749 aa14.34□□□□□ -0.11
CIITA-213ENST00000618327 CDK5RAP1Q96SZ6 601 aaKnown RBP14.34□□□□□ -0.11
CIITA-213ENST00000618327 OLA1Q9NTK5 396 aaKnown RBP14.34□□□□□ -0.11
CIITA-213ENST00000618327 DCTN4Q9UJW0 460 aa14.34□□□□□ -0.11
CIITA-213ENST00000618327 AAR2Q9Y312 384 aaKnown RBP14.34□□□□□ -0.11
CIITA-213ENST00000618327 SF3B1O75533 1304 aaKnown RBP eCLIP14.34□□□□□ -0.11
CIITA-213ENST00000618327 TRIM66O15016 1216 aa14.34□□□□□ -0.11
CIITA-213ENST00000618327 ST8SIA6P61647 398 aa14.34□□□□□ -0.11
CIITA-213ENST00000618327 TMED1Q13445 227 aa14.34□□□□□ -0.11
CIITA-213ENST00000618327 CRYGNQ8WXF5 182 aa14.34□□□□□ -0.11
CIITA-213ENST00000618327 KLF6Q99612 283 aaPredicted RBP14.34□□□□□ -0.11
CIITA-213ENST00000618327 PPARGC1AQ9UBK2 798 aaKnown RBP14.34□□□□□ -0.11
CIITA-213ENST00000618327 TMEM120BA0PK00 339 aa14.34□□□□□ -0.11
CIITA-213ENST00000618327 NUDT18Q6ZVK8 323 aa14.34□□□□□ -0.11
CIITA-213ENST00000618327 LRRC6Q86X45 466 aa14.34□□□□□ -0.11
CIITA-213ENST00000618327 CINPQ9BW66 212 aaPredicted RBP14.34□□□□□ -0.11
CIITA-213ENST00000618327 SHOC2Q9UQ13 582 aa14.34□□□□□ -0.11
CIITA-213ENST00000618327 RPS6KL1Q9Y6S9 549 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms