RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 GRK6P43250 576 aa10.72□□□□□ -0.69
TRIM28-210ENST00000597618 TPMTP51580 245 aa10.72□□□□□ -0.69
TRIM28-210ENST00000597618 AFF3P51826 1226 aaKnown RBP10.72□□□□□ -0.69
TRIM28-210ENST00000597618 CASP5P51878 434 aa10.72□□□□□ -0.69
TRIM28-210ENST00000597618 BNC1Q01954 994 aa10.72□□□□□ -0.69
TRIM28-210ENST00000597618 INAVAQ3KP66 663 aa10.72□□□□□ -0.69
TRIM28-210ENST00000597618 TPGS1Q6ZTW0 290 aa10.72□□□□□ -0.69
TRIM28-210ENST00000597618 SCAMP5Q8TAC9 235 aa10.72□□□□□ -0.69
TRIM28-210ENST00000597618 WBP2Q969T9 261 aa10.72□□□□□ -0.69
TRIM28-210ENST00000597618 NXPE2Q96DL1 559 aa10.72□□□□□ -0.69
TRIM28-210ENST00000597618 MKRN2Q9H000 416 aaKnown RBP10.72□□□□□ -0.69
TRIM28-210ENST00000597618 PCED1AQ9H1Q7 454 aa10.72□□□□□ -0.69
TRIM28-210ENST00000597618 DMAP1Q9NPF5 467 aaPredicted RBP10.72□□□□□ -0.69
TRIM28-210ENST00000597618 IL37Q9NZH6 218 aa10.72□□□□□ -0.69
TRIM28-210ENST00000597618 GMIPQ9P107 970 aa10.72□□□□□ -0.69
TRIM28-210ENST00000597618 EIF2B4Q9UI10 523 aaKnown RBP10.72□□□□□ -0.69
TRIM28-210ENST00000597618 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.72□□□□□ -0.69
TRIM28-210ENST00000597618 BTBD3Q9Y2F9 522 aa10.72□□□□□ -0.69
TRIM28-210ENST00000597618 NME7Q9Y5B8 376 aa10.72□□□□□ -0.69
TRIM28-210ENST00000597618 PTPRQQ9UMZ3 2332 aa10.72□□□□□ -0.69
TRIM28-210ENST00000597618 A0A1B0GVT2 93 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 FAM92AA1XBS5 289 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 KCNJ18B7U540 433 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 WASH3PC4AMC7 463 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 SYNCRIPO60506 623 aaKnown RBP10.71□□□□□ -0.69
TRIM28-210ENST00000597618 GREM1O60565 184 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 IGLV3-19P01714 112 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 ACADMP11310 421 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 CCT8P50990 548 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 GRIN1Q05586 938 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 E2F5Q15329 346 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 TEAD4Q15561 434 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 PTPRNQ16849 979 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 WDR72Q3MJ13 1102 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 LRRC69Q6ZNQ3 347 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 TRAPPC11Q7Z392 1133 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 ZNF605Q86T29 641 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 FAM35AQ86V20 835 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 TMPRSS12Q86WS5 348 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 CBWD2Q8IUF1 395 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 C1orf216Q8TAB5 229 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 PRCCQ92733 491 aaPredicted RBP10.71□□□□□ -0.69
TRIM28-210ENST00000597618 DNAJC19Q96DA6 116 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 SIPA1Q96FS4 1042 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 SMARCD1Q96GM5 515 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 KCNK16Q96T55 309 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 NUP58Q9BVL2 599 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 PRORYQ9H606 182 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 CCDC39Q9UFE4 941 aa10.71□□□□□ -0.69
TRIM28-210ENST00000597618 KNL1Q8NG31 2342 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 CABIN1Q9Y6J0 2220 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 HECTD1Q9ULT8 2610 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 CAPN9O14815 690 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 RRP8O43159 456 aaKnown RBP10.7□□□□□ -0.7
TRIM28-210ENST00000597618 PCDHGA12O60330 932 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 CISD3P0C7P0 127 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 IDEP14735 1019 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 HNF1BP35680 557 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 CSNK1EP49674 416 aaKnown RBP10.7□□□□□ -0.7
TRIM28-210ENST00000597618 ENPP2Q13822 863 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 KIF19Q2TAC6 998 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 CCDC157Q569K6 752 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 C6orf118Q5T5N4 469 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 DHRS13Q6UX07 377 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 STXBP4Q6ZWJ1 553 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 SV2BQ7L1I2 683 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 TMPRSS6Q8IU80 811 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 UCMAQ8WVF2 138 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 SNX19Q92543 992 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 BHMTQ93088 406 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 IGSF8Q969P0 613 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 MED10Q9BTT4 135 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 KLF16Q9BXK1 252 aaPredicted RBP10.7□□□□□ -0.7
TRIM28-210ENST00000597618 TRIM9Q9C026 710 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 FBXO44Q9H4M3 255 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 KIAA1586Q9HCI6 787 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 TLR8Q9NR97 1041 aaKnown RBP10.7□□□□□ -0.7
TRIM28-210ENST00000597618 KRT82Q9NSB4 513 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 THAP10Q9P2Z0 257 aaPredicted RBP10.7□□□□□ -0.7
TRIM28-210ENST00000597618 FTSJ1Q9UET6 329 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 SLC27A6Q9Y2P4 619 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 RAI2Q9Y5P3 530 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 SPTA1P02549 2419 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 ATMQ13315 3056 aa10.7□□□□□ -0.7
TRIM28-210ENST00000597618 FRMD3A2A2Y4 597 aa10.69□□□□□ -0.7
TRIM28-210ENST00000597618 CAPN8A6NHC0 703 aa10.69□□□□□ -0.7
TRIM28-210ENST00000597618 PLK4O00444 970 aa10.69□□□□□ -0.7
TRIM28-210ENST00000597618 STAU1O95793 577 aaKnown RBP10.69□□□□□ -0.7
TRIM28-210ENST00000597618 DLATP10515 647 aaKnown RBP10.69□□□□□ -0.7
TRIM28-210ENST00000597618 TNNI1P19237 187 aa10.69□□□□□ -0.7
TRIM28-210ENST00000597618 ACO1P21399 889 aaKnown RBP10.69□□□□□ -0.7
TRIM28-210ENST00000597618 ITPKBP27987 946 aa10.69□□□□□ -0.7
TRIM28-210ENST00000597618 ATP5C1P36542 298 aaKnown RBP10.69□□□□□ -0.7
TRIM28-210ENST00000597618 TXLNAP40222 546 aa10.69□□□□□ -0.7
TRIM28-210ENST00000597618 EIF2S3P41091 472 aaKnown RBP10.69□□□□□ -0.7
TRIM28-210ENST00000597618 IL12RB1P42701 662 aa10.69□□□□□ -0.7
TRIM28-210ENST00000597618 GRIA4P48058 902 aa10.69□□□□□ -0.7
TRIM28-210ENST00000597618 CDH8P55286 799 aa10.69□□□□□ -0.7
TRIM28-210ENST00000597618 ORC1Q13415 861 aa10.69□□□□□ -0.7
TRIM28-210ENST00000597618 SF3A1Q15459 793 aaKnown RBP10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 175.3 ms