RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	NDUFV1	P49821	464 aa		16.05	■□□□□ 0.16
DDX39A-209	ENST00000589318	ITIH4	Q14624	930 aa		16.05	■□□□□ 0.16
DDX39A-209	ENST00000589318	CDO1	Q16878	200 aa		16.05	■□□□□ 0.16
DDX39A-209	ENST00000589318	CAPRIN2	Q6IMN6	1127 aa	Known RBP	16.05	■□□□□ 0.16
DDX39A-209	ENST00000589318	GPRIN1	Q7Z2K8	1008 aa		16.05	■□□□□ 0.16
DDX39A-209	ENST00000589318	DDX42	Q86XP3	938 aa	Known RBP eCLIP	16.05	■□□□□ 0.16	4e-6	■□□□□ 8.2
DDX39A-209	ENST00000589318	CMAS	Q8NFW8	434 aa	Predicted RBP	16.05	■□□□□ 0.16
DDX39A-209	ENST00000589318	NDRG1	Q92597	394 aa	Known RBP	16.05	■□□□□ 0.16
DDX39A-209	ENST00000589318	DCLK3	Q9C098	648 aa		16.05	■□□□□ 0.16
DDX39A-209	ENST00000589318	CSNK1G1	Q9HCP0	422 aa		16.05	■□□□□ 0.16
DDX39A-209	ENST00000589318	NFU1	Q9UMS0	254 aa		16.05	■□□□□ 0.16
DDX39A-209	ENST00000589318	PRG3	Q9Y2Y8	225 aa	Predicted RBP	16.05	■□□□□ 0.16
DDX39A-209	ENST00000589318	KIAA0100	Q14667	2235 aa	Known RBP	16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	FAM187A	A6NFU0	413 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	CD48	P09326	243 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	PECAM1	P16284	738 aa	Predicted RBP	16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	PTPN9	P43378	593 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	GJA8	P48165	433 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	HDAC4	P56524	1084 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	PPP2R2A	P63151	447 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	ATP11A	P98196	1134 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	TFDP3	Q5H9I0	405 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	RAB41	Q5JT25	222 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	DUPD1	Q68J44	220 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	IFT81	Q8WYA0	676 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	CENPI	Q92674	756 aa	Predicted RBP	16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	SLCO2A1	Q92959	643 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	LTBP2	Q14767	1821 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	COL4A4	P53420	1690 aa	Predicted RBP	16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	COL4A6	Q14031	1691 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	ARHGEF37	A1IGU5	675 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	DAPK3	O43293	454 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	AHCYL1	O43865	530 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	FAM153B	P0C7A2	387 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	KDELR1	P24390	212 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	SDC4	P31431	198 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	C1QTNF8	P60827	252 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	MRPS5	P82675	430 aa	Known RBP	16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	FAM153C	Q494X1	144 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	ZFYVE27	Q5T4F4	411 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	BZW1	Q7L1Q6	419 aa	Known RBP	16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	DEFB128	Q7Z7B8	93 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	ABI1	Q8IZP0	508 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	FAM172A	Q8WUF8	416 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	NSMCE1	Q8WV22	266 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	ITFG2	Q969R8	447 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	SMARCD1	Q96GM5	515 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	FAM193B	Q96PV7	902 aa	Predicted RBP	16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	ERP44	Q9BS26	406 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	DDX23	Q9BUQ8	820 aa	Known RBP	16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	NEUROG2	Q9H2A3	272 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	FAM153A	Q9UHL3	310 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	PLAA	Q9Y263	795 aa		16.04	■□□□□ 0.16
DDX39A-209	ENST00000589318	CCT8L1P	A6NM43	557 aa		16.03	■□□□□ 0.16
DDX39A-209	ENST00000589318	NRP1	O14786	923 aa		16.03	■□□□□ 0.16
DDX39A-209	ENST00000589318	ENDOD1	O94919	500 aa		16.03	■□□□□ 0.16
DDX39A-209	ENST00000589318	OAZ2	O95190	189 aa		16.03	■□□□□ 0.16
DDX39A-209	ENST00000589318	ARSE	P51690	589 aa		16.03	■□□□□ 0.16
DDX39A-209	ENST00000589318	YWHAH	Q04917	246 aa	Predicted RBP	16.03	■□□□□ 0.16
DDX39A-209	ENST00000589318	CCNG2	Q16589	344 aa		16.03	■□□□□ 0.16
DDX39A-209	ENST00000589318	EFHC1	Q5JVL4	640 aa		16.03	■□□□□ 0.16
DDX39A-209	ENST00000589318	SPDYC	Q5MJ68	293 aa		16.03	■□□□□ 0.16
DDX39A-209	ENST00000589318	KAZN	Q674X7	775 aa		16.03	■□□□□ 0.16
DDX39A-209	ENST00000589318	NPAS4	Q8IUM7	802 aa		16.03	■□□□□ 0.16
DDX39A-209	ENST00000589318	TEX9	Q8N6V9	391 aa		16.03	■□□□□ 0.16
DDX39A-209	ENST00000589318	CCDC63	Q8NA47	563 aa		16.03	■□□□□ 0.16
DDX39A-209	ENST00000589318	CCDC197	Q8NCU1	140 aa		16.03	■□□□□ 0.16
DDX39A-209	ENST00000589318	RUNDC3B	Q96NL0	473 aa		16.03	■□□□□ 0.16
DDX39A-209	ENST00000589318	LRRC4	Q9HBW1	653 aa		16.03	■□□□□ 0.16
DDX39A-209	ENST00000589318	NGRN	Q9NPE2	291 aa	Known RBP	16.03	■□□□□ 0.16
DDX39A-209	ENST00000589318	MARCH5	Q9NX47	278 aa		16.03	■□□□□ 0.16
DDX39A-209	ENST00000589318	EFR3B	Q9Y2G0	817 aa		16.03	■□□□□ 0.16
DDX39A-209	ENST00000589318	ATP11B	Q9Y2G3	1177 aa		16.03	■□□□□ 0.16
DDX39A-209	ENST00000589318	UTP11	Q9Y3A2	253 aa	Known RBP	16.03	■□□□□ 0.16
DDX39A-209	ENST00000589318	SMNDC1	O75940	238 aa	Known RBP eCLIP	16.02	■□□□□ 0.16	7e-7	■■□□□ 13.3
DDX39A-209	ENST00000589318	FES	P07332	822 aa		16.02	■□□□□ 0.16
DDX39A-209	ENST00000589318	ALAD	P13716	330 aa		16.02	■□□□□ 0.16
DDX39A-209	ENST00000589318	BDNF	P23560	247 aa		16.02	■□□□□ 0.16
DDX39A-209	ENST00000589318	CETN2	P41208	172 aa		16.02	■□□□□ 0.16
DDX39A-209	ENST00000589318	TKTL1	P51854	596 aa		16.02	■□□□□ 0.16
DDX39A-209	ENST00000589318	SNX1	Q13596	522 aa		16.02	■□□□□ 0.16
DDX39A-209	ENST00000589318	OTUD1	Q5VV17	481 aa	Predicted RBP	16.02	■□□□□ 0.16
DDX39A-209	ENST00000589318	BHLHA9	Q7RTU4	235 aa		16.02	■□□□□ 0.16
DDX39A-209	ENST00000589318	CPLX4	Q7Z7G2	160 aa		16.02	■□□□□ 0.16
DDX39A-209	ENST00000589318	CCDC105	Q8IYK2	499 aa		16.02	■□□□□ 0.16
DDX39A-209	ENST00000589318	THEM5	Q8N1Q8	247 aa		16.02	■□□□□ 0.16
DDX39A-209	ENST00000589318	ANKLE1	Q8NAG6	615 aa		16.02	■□□□□ 0.16
DDX39A-209	ENST00000589318	FAM118B	Q9BPY3	351 aa		16.02	■□□□□ 0.16
DDX39A-209	ENST00000589318	ULBP1	Q9BZM6	244 aa		16.02	■□□□□ 0.16
DDX39A-209	ENST00000589318	RAB17	Q9H0T7	212 aa		16.02	■□□□□ 0.16
DDX39A-209	ENST00000589318	LRFN2	Q9ULH4	789 aa		16.02	■□□□□ 0.16
DDX39A-209	ENST00000589318	DAB1	O75553	588 aa		16.02	■□□□□ 0.15
DDX39A-209	ENST00000589318	TJP3	O95049	919 aa		16.02	■□□□□ 0.15
DDX39A-209	ENST00000589318	RPSA	P08865	295 aa	Known RBP	16.02	■□□□□ 0.15
DDX39A-209	ENST00000589318	NEFH	P12036	1026 aa		16.02	■□□□□ 0.15
DDX39A-209	ENST00000589318	CCND1	P24385	295 aa		16.02	■□□□□ 0.15
DDX39A-209	ENST00000589318	MATK	P42679	507 aa		16.02	■□□□□ 0.15
DDX39A-209	ENST00000589318	SLC11A1	P49279	550 aa		16.02	■□□□□ 0.15
DDX39A-209	ENST00000589318	ATXN1	P54253	815 aa	Known RBP	16.02	■□□□□ 0.15
DDX39A-209	ENST00000589318	DRG2	P55039	364 aa	Known RBP	16.02	■□□□□ 0.15

Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms