RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 HMCESQ96FZ2 354 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 TMEM120AQ9BXJ8 343 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 PCDHAC1Q9H158 963 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 SLC25A32Q9H2D1 315 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 CXorf36Q9H7Y0 433 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 OBP2BQ9NPH6 170 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 HELLSQ9NRZ9 838 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 ELOVL5Q9NYP7 299 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 LUZP4Q9P127 313 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 LRFN1Q9P244 771 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 DNAJB11Q9UBS4 358 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 HPSEQ9Y251 543 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 DGKBQ9Y6T7 804 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 CACNA1IQ9P0X4 2223 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 ACKR2O00590 384 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 KRT86O43790 486 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 SNX2O60749 519 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 ITGA2BP08514 1039 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 SRGNP10124 158 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 NPPBP16860 134 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 MST1P26927 711 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 ATICP31939 592 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 BCAT1P54687 386 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 NXPH1P58417 271 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 GALNT1Q10472 559 aaPredicted RBP4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 GPS1Q13098 491 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 LAMB3Q13751 1172 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 PRKG1Q13976 671 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 KRT81Q14533 505 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 TRIM71Q2Q1W2 868 aaKnown RBP4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 TSTD2Q5T7W7 516 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 MANEALQ5VSG8 457 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 RINLQ6ZS11 566 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 ATG16L2Q8NAA4 619 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 B3GALNT2Q8NCR0 500 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 DNAJB14Q8TBM8 379 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 IPO4Q8TEX9 1081 aaKnown RBP4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 OSCP1Q8WVF1 389 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 NACC2Q96BF6 587 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 C18orf8Q96DM3 657 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 PTCD3Q96EY7 689 aaKnown RBP4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 PRPF18Q99633 342 aaKnown RBP4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 TPSD1Q9BZJ3 242 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 MAGEH1Q9H213 219 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 TRIM36Q9NQ86 728 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 ZMYND8Q9ULU4 1186 aaPredicted RBP4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 AOX1Q06278 1338 aa4.35□□□□□ -1.71
SMCHD1-209ENST00000583441 CCDC189A1A4V9 331 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 OR2W5A6NFC9 320 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 MYMKA6NI61 221 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 hCG_1984214I3L0E3 225 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 PIP5K1BO14986 540 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 IRAK2O43187 625 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 VIPP01282 170 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 CSF1RP07333 972 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 PGDP52209 483 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 ITGA8P53708 1063 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 ALDH18A1P54886 795 aaKnown RBP4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 SOX10P56693 466 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 TIAL1Q01085 375 aaKnown RBP eCLIP4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 FHL3Q13643 280 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 CLCA4Q14CN2 919 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 ZNF628Q5EBL2 1059 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 TANGO2Q6ICL3 276 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 GGT6Q6P531 493 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 LDHAL6AQ6ZMR3 332 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 KCTD20Q7Z5Y7 419 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 DTX2Q86UW9 622 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 TTC30AQ86WT1 665 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 ANKRD18AQ8IVF6 992 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 MBD3L2Q8NHZ7 208 aaPredicted RBP4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 ABHD5Q8WTS1 349 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 RSC1A1Q92681 617 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 GCC1Q96CN9 775 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 GRAMD1AQ96CP6 724 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 NUDT22Q9BRQ3 303 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 KATNAL1Q9BW62 490 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 ACTRT3Q9BYD9 372 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 SEMA4CQ9C0C4 833 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 KCTD5Q9NXV2 234 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 HERC5Q9UII4 1024 aaKnown RBP4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 SERTAD3Q9UJW9 196 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 MRPS17Q9Y2R5 130 aaKnown RBP4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 DTNAQ9Y4J8 743 aa4.34□□□□□ -1.71
SMCHD1-209ENST00000583441 AQP12BA6NM10 295 aa4.33□□□□□ -1.72
SMCHD1-209ENST00000583441 LINC01548A6NM66 108 aa4.33□□□□□ -1.72
SMCHD1-209ENST00000583441 SLC16A3O15427 465 aaKnown RBP4.33□□□□□ -1.72
SMCHD1-209ENST00000583441 PROM1O43490 865 aa4.33□□□□□ -1.72
SMCHD1-209ENST00000583441 NXPH3O95157 252 aa4.33□□□□□ -1.72
SMCHD1-209ENST00000583441 FGAP02671 866 aa4.33□□□□□ -1.72
SMCHD1-209ENST00000583441 CD19P15391 556 aa4.33□□□□□ -1.72
SMCHD1-209ENST00000583441 MT3P25713 68 aa4.33□□□□□ -1.72
SMCHD1-209ENST00000583441 RBL1P28749 1068 aa4.33□□□□□ -1.72
SMCHD1-209ENST00000583441 NR4A2P43354 598 aa4.33□□□□□ -1.72
SMCHD1-209ENST00000583441 RENBPP51606 427 aa4.33□□□□□ -1.72
SMCHD1-209ENST00000583441 POU5F1BQ06416 359 aa4.33□□□□□ -1.72
SMCHD1-209ENST00000583441 PPFIA1Q13136 1202 aa4.33□□□□□ -1.72
SMCHD1-209ENST00000583441 ATP1A4Q13733 1029 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms