RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 TTLL2Q9BWV7 592 aa5.33□□□□□ -1.56
SMCHD1-204ENST00000581226 WDR12Q9GZL7 423 aaKnown RBP5.33□□□□□ -1.56
SMCHD1-204ENST00000581226 USP29Q9HBJ7 922 aa5.33□□□□□ -1.56
SMCHD1-204ENST00000581226 PTGFRNQ9P2B2 879 aa5.33□□□□□ -1.56
SMCHD1-204ENST00000581226 POLR2AP24928 1970 aaKnown RBP5.33□□□□□ -1.56
SMCHD1-204ENST00000581226 ABHD14A-ACY1A0A1B0GW23 586 aa5.32□□□□□ -1.56
SMCHD1-204ENST00000581226 OR2W5A6NFC9 320 aa5.32□□□□□ -1.56
SMCHD1-204ENST00000581226 MANSC4A6NHS7 340 aaPredicted RBP5.32□□□□□ -1.56
SMCHD1-204ENST00000581226 H7C1Q1 480 aa5.32□□□□□ -1.56
SMCHD1-204ENST00000581226 FFAR2O15552 330 aa5.32□□□□□ -1.56
SMCHD1-204ENST00000581226 ZNF37AP17032 561 aaPredicted RBP5.32□□□□□ -1.56
SMCHD1-204ENST00000581226 IL6STP40189 918 aaPredicted RBP5.32□□□□□ -1.56
SMCHD1-204ENST00000581226 DGKQP52824 942 aa5.32□□□□□ -1.56
SMCHD1-204ENST00000581226 TXNL4AP83876 142 aaKnown RBP5.32□□□□□ -1.56
SMCHD1-204ENST00000581226 BIRC2Q13490 618 aa5.32□□□□□ -1.56
SMCHD1-204ENST00000581226 PRAMEF17Q5VTA0 474 aa5.32□□□□□ -1.56
SMCHD1-204ENST00000581226 RASGRP3Q8IV61 690 aa5.32□□□□□ -1.56
SMCHD1-204ENST00000581226 C12orf76Q8N812 135 aaPredicted RBP5.32□□□□□ -1.56
SMCHD1-204ENST00000581226 FAM71DQ8N9W8 422 aa5.32□□□□□ -1.56
SMCHD1-204ENST00000581226 ZNF527Q8NB42 609 aa5.32□□□□□ -1.56
SMCHD1-204ENST00000581226 VPS37AQ8NEZ2 397 aa5.32□□□□□ -1.56
SMCHD1-204ENST00000581226 CCDC17Q96LX7 622 aa5.32□□□□□ -1.56
SMCHD1-204ENST00000581226 IGSF9Q9P2J2 1179 aa5.32□□□□□ -1.56
SMCHD1-204ENST00000581226 TAGLN3Q9UI15 199 aa5.32□□□□□ -1.56
SMCHD1-204ENST00000581226 A0A087WV62 115 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 PIP5K1BO14986 540 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 CBFA2T3O75081 653 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 GCATO75600 419 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 MT-CO3P00414 261 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 NHLRC4P0CG21 123 aaPredicted RBP5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 APEHP13798 732 aaKnown RBP5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 DRD1P21728 446 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 PROK1P58294 105 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 TNFAIP2Q03169 654 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 TFF2Q03403 129 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 BFSP2Q13515 415 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 PROSER3Q2NL68 480 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 P3H1Q32P28 736 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 AASDHQ4L235 1098 aaPredicted RBP5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 TMEM196Q5HYL7 178 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 PGBD2Q6P3X8 592 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 TLDC1Q6P9B6 456 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 TMEM65Q6PI78 240 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 CHSY1Q86X52 802 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 PNLDC1Q8NA58 520 aaKnown RBP5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 HASPINQ8TF76 798 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 HS6ST2Q96MM7 605 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 RPS6KC1Q96S38 1066 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 CRB3Q9BUF7 120 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 CINPQ9BW66 212 aaPredicted RBP5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 EPS8L2Q9H6S3 715 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 ASIC5Q9NY37 505 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 CA14Q9ULX7 337 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 DTNAQ9Y4J8 743 aa5.31□□□□□ -1.56
SMCHD1-204ENST00000581226 TCRBV5S1A1TA0A578 114 aa5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 F5H423 210 aaPredicted RBP5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 POC1B-GALNT4F8VUJ3 575 aa5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 PEX14O75381 377 aa5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 PRKCGP05129 697 aa5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 TMIGD3P0DMS9 266 aaPredicted RBP5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 CD38P28907 300 aa5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 TUBA4AP68366 448 aa5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 CFHR3Q02985 330 aa5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 CCDC15Q0P6D6 951 aa5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 CHAF1AQ13111 956 aaPredicted RBP5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 DNASE1L3Q13609 305 aa5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 KCNJ12Q14500 433 aa5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 FAM187BQ17R55 369 aa5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 TMEM63BQ5T3F8 832 aa5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 PTF1AQ7RTS3 328 aa5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 TTC30AQ86WT1 665 aa5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 MYLK4Q86YV6 388 aaPredicted RBP5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 GALNT4Q8N4A0 578 aa5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 SEMA6DQ8NFY4 1073 aa5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 MAFAQ8NHW3 353 aaPredicted RBP5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 ADAMTS18Q8TE60 1221 aa5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 EDC3Q96F86 508 aaKnown RBP5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 ZNF764Q96H86 408 aaPredicted RBP5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 PRR11Q96HE9 360 aaPredicted RBP5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 FYTTD1Q96QD9 318 aaKnown RBP5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 NUDT22Q9BRQ3 303 aa5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 TMEM8AQ9HCN3 771 aa5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 HELLSQ9NRZ9 838 aa5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 PCDHB2Q9Y5E7 798 aa5.3□□□□□ -1.56
SMCHD1-204ENST00000581226 PNMA6EA0A0J9YXQ4 647 aa5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 GOLGA6L3A6NEY3 463 aa5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 LINC01548A6NM66 108 aa5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 TISP43B9A030 160 aa5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 PRRT4C9JH25 899 aa5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 BTBD19C9JJ37 291 aa5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 UBE2Q2LH0YL09 131 aa5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 J3KTA2 159 aa5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 RBMXL2O75526 392 aaKnown RBP5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 USP1O94782 785 aa5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 GLP2RO95838 553 aa5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 GSTM5P46439 218 aa5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 GPC5P78333 572 aa5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 SEMA3BQ13214 749 aa5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 MFSD13AQ14CX5 517 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 151.2 ms