RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 RAP1GAP2Q684P5 730 aa7.43□□□□□ -1.22
SS18-214ENST00000580003 DCDC5Q6ZRR9 648 aa7.43□□□□□ -1.22
SS18-214ENST00000580003 LINC01465Q8N7H1 131 aa7.43□□□□□ -1.22
SS18-214ENST00000580003 FAM71DQ8N9W8 422 aa7.43□□□□□ -1.22
SS18-214ENST00000580003 VOPP1Q96AW1 172 aa7.43□□□□□ -1.22
SS18-214ENST00000580003 PODXLO00592 558 aa7.42□□□□□ -1.22
SS18-214ENST00000580003 HNRNPDLO14979 420 aaKnown RBP7.42□□□□□ -1.22
SS18-214ENST00000580003 CA12O43570 354 aa7.42□□□□□ -1.22
SS18-214ENST00000580003 TUBB4AP04350 444 aa7.42□□□□□ -1.22
SS18-214ENST00000580003 CELA2AP08217 269 aa7.42□□□□□ -1.22
SS18-214ENST00000580003 BTKQ06187 659 aa7.42□□□□□ -1.22
SS18-214ENST00000580003 CCDC15Q0P6D6 951 aa7.42□□□□□ -1.22
SS18-214ENST00000580003 MTAPQ13126 283 aa7.42□□□□□ -1.22
SS18-214ENST00000580003 HDAC1Q13547 482 aaPredicted RBP7.42□□□□□ -1.22
SS18-214ENST00000580003 LARS2Q15031 903 aaKnown RBP7.42□□□□□ -1.22
SS18-214ENST00000580003 VSTM1Q6UX27 236 aa7.42□□□□□ -1.22
SS18-214ENST00000580003 ZNF66Q6ZN08 573 aa7.42□□□□□ -1.22
SS18-214ENST00000580003 DDX51Q8N8A6 666 aaKnown RBP eCLIP7.42□□□□□ -1.22
SS18-214ENST00000580003 GLIS1Q8NBF1 620 aa7.42□□□□□ -1.22
SS18-214ENST00000580003 SVIPQ8NHG7 77 aa7.42□□□□□ -1.22
SS18-214ENST00000580003 DEPTORQ8TB45 409 aa7.42□□□□□ -1.22
SS18-214ENST00000580003 GJA10Q969M2 543 aa7.42□□□□□ -1.22
SS18-214ENST00000580003 EDC3Q96F86 508 aaKnown RBP7.42□□□□□ -1.22
SS18-214ENST00000580003 C5orf34Q96MH7 638 aa7.42□□□□□ -1.22
SS18-214ENST00000580003 GDF15Q99988 308 aa7.42□□□□□ -1.22
SS18-214ENST00000580003 NLRC4Q9NPP4 1024 aa7.42□□□□□ -1.22
SS18-214ENST00000580003 PCDHGB2Q9Y5G2 931 aa7.42□□□□□ -1.22
SS18-214ENST00000580003 PPP6CO00743 305 aa7.41□□□□□ -1.22
SS18-214ENST00000580003 RNF8O76064 485 aa7.41□□□□□ -1.22
SS18-214ENST00000580003 LATS1O95835 1130 aa7.41□□□□□ -1.22
SS18-214ENST00000580003 CYP2A6P11509 494 aaPredicted RBP7.41□□□□□ -1.22
SS18-214ENST00000580003 MPGP29372 298 aa7.41□□□□□ -1.22
SS18-214ENST00000580003 PBX1P40424 430 aa7.41□□□□□ -1.22
SS18-214ENST00000580003 ABCG1P45844 678 aa7.41□□□□□ -1.22
SS18-214ENST00000580003 FHL3Q13643 280 aa7.41□□□□□ -1.22
SS18-214ENST00000580003 ATP1A4Q13733 1029 aa7.41□□□□□ -1.22
SS18-214ENST00000580003 KCNB1Q14721 858 aa7.41□□□□□ -1.22
SS18-214ENST00000580003 EZH2Q15910 746 aaKnown RBP7.41□□□□□ -1.22
SS18-214ENST00000580003 MAPKAPK3Q16644 382 aa7.41□□□□□ -1.22
SS18-214ENST00000580003 ARHGAP15Q53QZ3 475 aa7.41□□□□□ -1.22
SS18-214ENST00000580003 GRHL2Q6ISB3 625 aa7.41□□□□□ -1.22
SS18-214ENST00000580003 MIS18BP1Q6P0N0 1132 aa7.41□□□□□ -1.22
SS18-214ENST00000580003 C8orf58Q8NAV2 365 aa7.41□□□□□ -1.22
SS18-214ENST00000580003 KIAA1191Q96A73 305 aa7.41□□□□□ -1.22
SS18-214ENST00000580003 SGCZQ96LD1 299 aa7.41□□□□□ -1.22
SS18-214ENST00000580003 TM7SF3Q9NS93 570 aa7.41□□□□□ -1.22
SS18-214ENST00000580003 GAR1Q9NY12 217 aaKnown RBP7.41□□□□□ -1.22
SS18-214ENST00000580003 FNIP2Q9P278 1114 aa7.41□□□□□ -1.22
SS18-214ENST00000580003 CGB1A6NKQ9 187 aa7.4□□□□□ -1.22
SS18-214ENST00000580003 H3BNC9 293 aa7.4□□□□□ -1.22
SS18-214ENST00000580003 CLIC1O00299 241 aa7.4□□□□□ -1.22
SS18-214ENST00000580003 ADAMTS3O15072 1205 aa7.4□□□□□ -1.22
SS18-214ENST00000580003 VIPP01282 170 aa7.4□□□□□ -1.22
SS18-214ENST00000580003 SRGAP2BP0DMP2 458 aa7.4□□□□□ -1.22
SS18-214ENST00000580003 PECAM1P16284 738 aaPredicted RBP7.4□□□□□ -1.22
SS18-214ENST00000580003 DRD1P21728 446 aa7.4□□□□□ -1.22
SS18-214ENST00000580003 EPHB2P29323 1055 aa7.4□□□□□ -1.22
SS18-214ENST00000580003 HSPA7P48741 367 aa7.4□□□□□ -1.22
SS18-214ENST00000580003 GPC5P78333 572 aa7.4□□□□□ -1.22
SS18-214ENST00000580003 NSUN2Q08J23 767 aaKnown RBP eCLIP7.4□□□□□ -1.22
SS18-214ENST00000580003 MFSD13AQ14CX5 517 aa7.4□□□□□ -1.22
SS18-214ENST00000580003 MPEG1Q2M385 716 aa7.4□□□□□ -1.22
SS18-214ENST00000580003 CEP78Q5JTW2 689 aa7.4□□□□□ -1.22
SS18-214ENST00000580003 CC2D1BQ5T0F9 858 aaKnown RBP7.4□□□□□ -1.22
SS18-214ENST00000580003 TLDC1Q6P9B6 456 aa7.4□□□□□ -1.22
SS18-214ENST00000580003 TTC30AQ86WT1 665 aa7.4□□□□□ -1.22
SS18-214ENST00000580003 C16orf71Q8IYS4 520 aaPredicted RBP7.4□□□□□ -1.22
SS18-214ENST00000580003 WDR24Q96S15 920 aa7.4□□□□□ -1.22
SS18-214ENST00000580003 ARFGAP3Q9NP61 516 aa7.4□□□□□ -1.22
SS18-214ENST00000580003 MAFFQ9ULX9 164 aa7.4□□□□□ -1.22
SS18-214ENST00000580003 LOC105378220A0A1B0GUY1 285 aaPredicted RBP7.39□□□□□ -1.23
SS18-214ENST00000580003 TMIGD3P0DMS9 266 aaPredicted RBP7.39□□□□□ -1.23
SS18-214ENST00000580003 ABCB4P21439 1286 aa7.39□□□□□ -1.23
SS18-214ENST00000580003 BFSP2Q13515 415 aa7.39□□□□□ -1.23
SS18-214ENST00000580003 DNASE1L3Q13609 305 aa7.39□□□□□ -1.23
SS18-214ENST00000580003 AASDHQ4L235 1098 aaPredicted RBP7.39□□□□□ -1.23
SS18-214ENST00000580003 DGKKQ5KSL6 1271 aa7.39□□□□□ -1.23
SS18-214ENST00000580003 SYCP2LQ5T4T6 812 aa7.39□□□□□ -1.23
SS18-214ENST00000580003 EIF3CQ99613 913 aaKnown RBP7.39□□□□□ -1.23
SS18-214ENST00000580003 ZNF700Q9H0M5 742 aa7.39□□□□□ -1.23
SS18-214ENST00000580003 NRIP3Q9NQ35 241 aa7.39□□□□□ -1.23
SS18-214ENST00000580003 NECTIN3Q9NQS3 549 aa7.39□□□□□ -1.23
SS18-214ENST00000580003 FZD4Q9ULV1 537 aa7.39□□□□□ -1.23
SS18-214ENST00000580003 WDR17Q8IZU2 1322 aa7.38□□□□□ -1.23
SS18-214ENST00000580003 FYB1O15117 783 aa7.38□□□□□ -1.23
SS18-214ENST00000580003 PRAMEF2O60811 474 aa7.38□□□□□ -1.23
SS18-214ENST00000580003 CDK4P11802 303 aa7.38□□□□□ -1.23
SS18-214ENST00000580003 GSTM5P46439 218 aa7.38□□□□□ -1.23
SS18-214ENST00000580003 KCNJ12Q14500 433 aa7.38□□□□□ -1.23
SS18-214ENST00000580003 P3H1Q32P28 736 aa7.38□□□□□ -1.23
SS18-214ENST00000580003 AWAT1Q58HT5 328 aa7.38□□□□□ -1.23
SS18-214ENST00000580003 TMEM196Q5HYL7 178 aa7.38□□□□□ -1.23
SS18-214ENST00000580003 ZKSCAN2Q63HK3 967 aa7.38□□□□□ -1.23
SS18-214ENST00000580003 ARL6IP4Q66PJ3 421 aaKnown RBP7.38□□□□□ -1.23
SS18-214ENST00000580003 ZNF813Q6ZN06 617 aa7.38□□□□□ -1.23
SS18-214ENST00000580003 YTHDF3Q7Z739 585 aaKnown RBP7.38□□□□□ -1.23
SS18-214ENST00000580003 GALNT16Q8N428 558 aa7.38□□□□□ -1.23
SS18-214ENST00000580003 HIC2Q96JB3 615 aa7.38□□□□□ -1.23
SS18-214ENST00000580003 SH2D3AQ9BRG2 576 aa7.38□□□□□ -1.23
SS18-214ENST00000580003 EFHD1Q9BUP0 239 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms