RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 RGS7P49802 495 aa14.65□□□□□ -0.06
CLN3-235ENST00000568497 DGKEP52429 567 aa14.65□□□□□ -0.06
CLN3-235ENST00000568497 PLCB2Q00722 1185 aa14.65□□□□□ -0.06
CLN3-235ENST00000568497 TAF10Q12962 218 aa14.65□□□□□ -0.06
CLN3-235ENST00000568497 ZSCAN23Q3MJ62 389 aa14.65□□□□□ -0.06
CLN3-235ENST00000568497 FSTL4Q6MZW2 842 aa14.65□□□□□ -0.06
CLN3-235ENST00000568497 TRIM65Q6PJ69 517 aa14.65□□□□□ -0.06
CLN3-235ENST00000568497 GBP6Q6ZN66 633 aa14.65□□□□□ -0.06
CLN3-235ENST00000568497 CLEC20AQ6ZU45 233 aa14.65□□□□□ -0.06
CLN3-235ENST00000568497 ITIH5Q86UX2 942 aa14.65□□□□□ -0.06
CLN3-235ENST00000568497 UNC93AQ86WB7 457 aa14.65□□□□□ -0.06
CLN3-235ENST00000568497 CHCHD4Q8N4Q1 142 aa14.65□□□□□ -0.06
CLN3-235ENST00000568497 ARL14EPQ8N8R7 260 aaPredicted RBP14.65□□□□□ -0.06
CLN3-235ENST00000568497 RBBP8NLQ8NC74 664 aaPredicted RBP14.65□□□□□ -0.06
CLN3-235ENST00000568497 HNRNPLLQ8WVV9 542 aaKnown RBP14.65□□□□□ -0.06
CLN3-235ENST00000568497 FUBP3Q96I24 572 aaKnown RBP eCLIP14.65□□□□□ -0.06
CLN3-235ENST00000568497 TNIP3Q96KP6 325 aa14.65□□□□□ -0.06
CLN3-235ENST00000568497 NDST4Q9H3R1 872 aa14.65□□□□□ -0.06
CLN3-235ENST00000568497 GMIPQ9P107 970 aa14.65□□□□□ -0.06
CLN3-235ENST00000568497 THADAQ6YHU6 1953 aa14.65□□□□□ -0.06
CLN3-235ENST00000568497 CACNA1EQ15878 2313 aa14.65□□□□□ -0.06
CLN3-235ENST00000568497 DENND4CQ5VZ89 1909 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 IGSF10Q6WRI0 2623 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 BECN2A8MW95 431 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 HHLA1C9JL84 531 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 H0Y626 953 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 MDM4O15151 490 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 EPHB6O15197 1021 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 TRIM16O95361 564 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 APBB3O95704 486 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 FAM163BP0C2L3 166 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 FAM200BP0CF97 657 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 CSH1P0DML2 217 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 CSH2P0DML3 217 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 DHPSP49366 369 aaPredicted RBP14.64□□□□□ -0.07
CLN3-235ENST00000568497 COPB1P53618 953 aaKnown RBP14.64□□□□□ -0.07
CLN3-235ENST00000568497 SLC5A3P53794 718 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 MYL5Q02045 173 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 SCAPQ12770 1279 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 SMARCB1Q12824 385 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 MAPRE1Q15691 268 aaKnown RBP14.64□□□□□ -0.07
CLN3-235ENST00000568497 EXOC3L4Q17RC7 722 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 TMEM196Q5HYL7 178 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 PMS2CLQ68D20 193 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 VSTM1Q6UX27 236 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 DENND5BQ6ZUT9 1274 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 LUZP1Q86V48 1076 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 ABCA7Q8IZY2 2146 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 BPIFB1Q8TDL5 484 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 PIGKQ92643 395 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 WBP2Q969T9 261 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 SMARCD1Q96GM5 515 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 LRIG1Q96JA1 1093 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 SMPD4Q9NXE4 827 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 ASB3Q9Y575 518 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 FHOD1Q9Y613 1164 aa14.64□□□□□ -0.07
CLN3-235ENST00000568497 HELZ2Q9BYK8 2649 aaKnown RBP14.64□□□□□ -0.07
CLN3-235ENST00000568497 NUP210Q8TEM1 1887 aaPredicted RBP14.63□□□□□ -0.07
CLN3-235ENST00000568497 FREM2Q5SZK8 3169 aa14.63□□□□□ -0.07
CLN3-235ENST00000568497 TNFRSF10BO14763 440 aa14.63□□□□□ -0.07
CLN3-235ENST00000568497 TRIM66O15016 1216 aa14.63□□□□□ -0.07
CLN3-235ENST00000568497 CYP26A1O43174 497 aa14.63□□□□□ -0.07
CLN3-235ENST00000568497 GABBR2O75899 941 aa14.63□□□□□ -0.07
CLN3-235ENST00000568497 TBX18O95935 607 aa14.63□□□□□ -0.07
CLN3-235ENST00000568497 EGFP01133 1207 aa14.63□□□□□ -0.07
CLN3-235ENST00000568497 ZXDBP98169 803 aa14.63□□□□□ -0.07
CLN3-235ENST00000568497 LMAN2Q12907 356 aa14.63□□□□□ -0.07
CLN3-235ENST00000568497 TRIM61Q5EBN2 209 aa14.63□□□□□ -0.07
CLN3-235ENST00000568497 DENND1BQ6P3S1 775 aa14.63□□□□□ -0.07
CLN3-235ENST00000568497 FAM114A1Q8IWE2 563 aa14.63□□□□□ -0.07
CLN3-235ENST00000568497 RPLP0P6Q8NHW5 317 aa14.63□□□□□ -0.07
CLN3-235ENST00000568497 ADAM32Q8TC27 787 aa14.63□□□□□ -0.07
CLN3-235ENST00000568497 FBXO32Q969P5 355 aa14.63□□□□□ -0.07
CLN3-235ENST00000568497 C8orf48Q96LL4 319 aa14.63□□□□□ -0.07
CLN3-235ENST00000568497 HNRNPABQ99729 332 aaKnown RBP14.63□□□□□ -0.07
CLN3-235ENST00000568497 NUSAP1Q9BXS6 441 aaKnown RBP14.63□□□□□ -0.07
CLN3-235ENST00000568497 TPSD1Q9BZJ3 242 aa14.63□□□□□ -0.07
CLN3-235ENST00000568497 RNF38Q9H0F5 515 aa14.63□□□□□ -0.07
CLN3-235ENST00000568497 CBX8Q9HC52 389 aa14.63□□□□□ -0.07
CLN3-235ENST00000568497 DMAP1Q9NPF5 467 aaPredicted RBP14.63□□□□□ -0.07
CLN3-235ENST00000568497 THG1LQ9NWX6 298 aaKnown RBP14.63□□□□□ -0.07
CLN3-235ENST00000568497 OSER1Q9NX31 292 aa14.63□□□□□ -0.07
CLN3-235ENST00000568497 HSFX1Q9UBD0 423 aa14.63□□□□□ -0.07
CLN3-235ENST00000568497 DNAJC12Q9UKB3 198 aa14.63□□□□□ -0.07
CLN3-235ENST00000568497 TSPAN16Q9UKR8 245 aa14.63□□□□□ -0.07
CLN3-235ENST00000568497 MYO16Q9Y6X6 1858 aa14.63□□□□□ -0.07
CLN3-235ENST00000568497 LAMA5O15230 3695 aa14.62□□□□□ -0.07
CLN3-235ENST00000568497 FAM221BA6H8Z2 402 aa14.62□□□□□ -0.07
CLN3-235ENST00000568497 PMM2O15305 246 aa14.62□□□□□ -0.07
CLN3-235ENST00000568497 P4HA2O15460 535 aa14.62□□□□□ -0.07
CLN3-235ENST00000568497 TEX33O43247 280 aa14.62□□□□□ -0.07
CLN3-235ENST00000568497 ZNF18P17022 549 aa14.62□□□□□ -0.07
CLN3-235ENST00000568497 YWHAQP27348 245 aa14.62□□□□□ -0.07
CLN3-235ENST00000568497 WEE1P30291 646 aa14.62□□□□□ -0.07
CLN3-235ENST00000568497 PDE4CQ08493 712 aa14.62□□□□□ -0.07
CLN3-235ENST00000568497 CETN1Q12798 172 aa14.62□□□□□ -0.07
CLN3-235ENST00000568497 USP39Q53GS9 565 aaKnown RBP14.62□□□□□ -0.07
CLN3-235ENST00000568497 ARHGAP15Q53QZ3 475 aa14.62□□□□□ -0.07
CLN3-235ENST00000568497 TRIM68Q6AZZ1 485 aa14.62□□□□□ -0.07
CLN3-235ENST00000568497 APTXQ7Z2E3 356 aaKnown RBP14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms