RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 FYB1O15117 783 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 INPPL1O15357 1258 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 THAP12O43422 761 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 CCNT2O60583 730 aaKnown RBP3.44□□□□□ -1.86
VPS35-207ENST00000568191 SCGB1D2O95969 90 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 ZBED1O96006 694 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 CTSAP10619 480 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 PEX2P28328 305 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 JAK3P52333 1124 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 SLC12A2P55011 1212 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 HTRA4P83105 476 aaPredicted RBP3.44□□□□□ -1.86
VPS35-207ENST00000568191 IRF2BP2Q7Z5L9 587 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 COL23A1Q86Y22 540 aaPredicted RBP3.44□□□□□ -1.86
VPS35-207ENST00000568191 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.44□□□□□ -1.86
VPS35-207ENST00000568191 UEVLDQ8IX04 471 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 SAMD14Q8IZD0 417 aaPredicted RBP3.44□□□□□ -1.86
VPS35-207ENST00000568191 MYO1HQ8N1T3 1032 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 CCDC150Q8NCX0 1101 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 FAM156AQ8NDB6 213 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 ABHD5Q8WTS1 349 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 JDP2Q8WYK2 163 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 EDC3Q96F86 508 aaKnown RBP3.44□□□□□ -1.86
VPS35-207ENST00000568191 ZFYVE19Q96K21 471 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 SNX22Q96L94 193 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 NUP62CLQ9H1M0 184 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 PRDM11Q9NQV5 511 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 TMEM184CQ9NVA4 438 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 WWOXQ9NZC7 414 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 TMOD4Q9NZQ9 345 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 RIMKLBQ9ULI2 386 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 FZD4Q9ULV1 537 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 HPSEQ9Y251 543 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 SLC27A6Q9Y2P4 619 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 SNX13Q9Y5W8 968 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 EID1Q9Y6B2 187 aa3.44□□□□□ -1.86
VPS35-207ENST00000568191 FRMPD2Q68DX3 1309 aaPredicted RBP3.44□□□□□ -1.86
VPS35-207ENST00000568191 SHROOM4Q9ULL8 1493 aa3.43□□□□□ -1.86
VPS35-207ENST00000568191 IGKV2D-30A0A075B6S6 120 aa3.43□□□□□ -1.86
VPS35-207ENST00000568191 LY6G6EA0A0G2JKS1 128 aa3.43□□□□□ -1.86
VPS35-207ENST00000568191 CD8B2A6NJW9 211 aa3.43□□□□□ -1.86
VPS35-207ENST00000568191 SYF2O95926 243 aaKnown RBP3.43□□□□□ -1.86
VPS35-207ENST00000568191 CRYABP02511 175 aaKnown RBP3.43□□□□□ -1.86
VPS35-207ENST00000568191 TMIGD3P0DMS9 266 aaPredicted RBP3.43□□□□□ -1.86
VPS35-207ENST00000568191 IDEP14735 1019 aa3.43□□□□□ -1.86
VPS35-207ENST00000568191 HOXD9P28356 352 aaPredicted RBP3.43□□□□□ -1.86
VPS35-207ENST00000568191 CDC25AP30304 524 aa3.43□□□□□ -1.86
VPS35-207ENST00000568191 IL6STP40189 918 aaPredicted RBP3.43□□□□□ -1.86
VPS35-207ENST00000568191 GPC5P78333 572 aa3.43□□□□□ -1.86
VPS35-207ENST00000568191 SLC14A1Q13336 389 aa3.43□□□□□ -1.86
VPS35-207ENST00000568191 CNGA3Q16281 694 aa3.43□□□□□ -1.86
VPS35-207ENST00000568191 PLEKHG6Q3KR16 790 aa3.43□□□□□ -1.86
VPS35-207ENST00000568191 AWAT1Q58HT5 328 aa3.43□□□□□ -1.86
VPS35-207ENST00000568191 MANEAQ5SRI9 462 aa3.43□□□□□ -1.86
VPS35-207ENST00000568191 DAB2IPQ5VWQ8 1189 aa3.43□□□□□ -1.86
VPS35-207ENST00000568191 SWSAP1Q6NVH7 229 aa3.43□□□□□ -1.86
VPS35-207ENST00000568191 MBD3L2Q8NHZ7 208 aaPredicted RBP3.43□□□□□ -1.86
VPS35-207ENST00000568191 WDYHV1Q96HA8 205 aa3.43□□□□□ -1.86
VPS35-207ENST00000568191 VCPIP1Q96JH7 1222 aa3.43□□□□□ -1.86
VPS35-207ENST00000568191 ZC3H10Q96K80 434 aaKnown RBP3.43□□□□□ -1.86
VPS35-207ENST00000568191 MSLNLQ96KJ4 702 aa3.43□□□□□ -1.86
VPS35-207ENST00000568191 FAM227BQ96M60 508 aa3.43□□□□□ -1.86
VPS35-207ENST00000568191 BRIP1Q9BX63 1249 aa3.43□□□□□ -1.86
VPS35-207ENST00000568191 UNKQ9C0B0 810 aaKnown RBP3.43□□□□□ -1.86
VPS35-207ENST00000568191 BTBD1Q9H0C5 482 aa3.43□□□□□ -1.86
VPS35-207ENST00000568191 PNPLA8Q9NP80 782 aa3.43□□□□□ -1.86
VPS35-207ENST00000568191 HEYLQ9NQ87 328 aaPredicted RBP3.43□□□□□ -1.86
VPS35-207ENST00000568191 TBC1D23Q9NUY8 699 aa3.43□□□□□ -1.86
VPS35-207ENST00000568191 COL20A1Q9P218 1284 aa3.43□□□□□ -1.86
VPS35-207ENST00000568191 IPO11Q9UI26 975 aaKnown RBP3.43□□□□□ -1.86
VPS35-207ENST00000568191 CAPN11Q9UMQ6 739 aa3.43□□□□□ -1.86
VPS35-207ENST00000568191 HEMK1Q9Y5R4 338 aaPredicted RBP3.43□□□□□ -1.86
VPS35-207ENST00000568191 TPP1O14773 563 aa3.42□□□□□ -1.86
VPS35-207ENST00000568191 ZC3H11AO75152 810 aaKnown RBP eCLIP3.42□□□□□ -1.86
VPS35-207ENST00000568191 COQ9O75208 318 aa3.42□□□□□ -1.86
VPS35-207ENST00000568191 MT-ND5P03915 603 aa3.42□□□□□ -1.86
VPS35-207ENST00000568191 ANXA2P07355 339 aaKnown RBP3.42□□□□□ -1.86
VPS35-207ENST00000568191 CYP19A1P11511 503 aaPredicted RBP3.42□□□□□ -1.86
VPS35-207ENST00000568191 MMP8P22894 467 aa3.42□□□□□ -1.86
VPS35-207ENST00000568191 YY1P25490 414 aa3.42□□□□□ -1.86
VPS35-207ENST00000568191 CCKARP32238 428 aa3.42□□□□□ -1.86
VPS35-207ENST00000568191 MCM5P33992 734 aa3.42□□□□□ -1.86
VPS35-207ENST00000568191 WDR5P61964 334 aaKnown RBP3.42□□□□□ -1.86
VPS35-207ENST00000568191 CFHR1Q03591 330 aa3.42□□□□□ -1.86
VPS35-207ENST00000568191 GLE1Q53GS7 698 aaKnown RBP3.42□□□□□ -1.86
VPS35-207ENST00000568191 LCE1AQ5T7P2 110 aa3.42□□□□□ -1.86
VPS35-207ENST00000568191 MANEALQ5VSG8 457 aa3.42□□□□□ -1.86
VPS35-207ENST00000568191 ZNF793Q6ZN11 406 aa3.42□□□□□ -1.86
VPS35-207ENST00000568191 COLCA1Q6ZS62 124 aa3.42□□□□□ -1.86
VPS35-207ENST00000568191 USP49Q70CQ1 688 aa3.42□□□□□ -1.86
VPS35-207ENST00000568191 FAM57BQ71RH2 274 aa3.42□□□□□ -1.86
VPS35-207ENST00000568191 CHST15Q7LFX5 561 aaPredicted RBP3.42□□□□□ -1.86
VPS35-207ENST00000568191 METTL25Q8N6Q8 603 aa3.42□□□□□ -1.86
VPS35-207ENST00000568191 PIGKQ92643 395 aa3.42□□□□□ -1.86
VPS35-207ENST00000568191 KAT2BQ92831 832 aa3.42□□□□□ -1.86
VPS35-207ENST00000568191 TTC17Q96AE7 1141 aa3.42□□□□□ -1.86
VPS35-207ENST00000568191 IQCDQ96DY2 449 aa3.42□□□□□ -1.86
VPS35-207ENST00000568191 TUBB6Q9BUF5 446 aa3.42□□□□□ -1.86
VPS35-207ENST00000568191 SLC25A32Q9H2D1 315 aa3.42□□□□□ -1.86
VPS35-207ENST00000568191 ZBTB26Q9HCK0 441 aa3.42□□□□□ -1.86
VPS35-207ENST00000568191 COL15A1P39059 1388 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms