RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 TAF12Q16514 161 aa5.38□□□□□ -1.55
LINC00560-201ENST00000564593 TRIM60Q495X7 471 aa5.38□□□□□ -1.55
LINC00560-201ENST00000564593 ALFQ53S48 1182 aa5.38□□□□□ -1.55
LINC00560-201ENST00000564593 GRHL2Q6ISB3 625 aa5.38□□□□□ -1.55
LINC00560-201ENST00000564593 MSANTD2Q6P1R3 559 aa5.38□□□□□ -1.55
LINC00560-201ENST00000564593 CYP26C1Q6V0L0 522 aa5.38□□□□□ -1.55
LINC00560-201ENST00000564593 PIK3AP1Q6ZUJ8 805 aa5.38□□□□□ -1.55
LINC00560-201ENST00000564593 USP51Q70EK9 711 aa5.38□□□□□ -1.55
LINC00560-201ENST00000564593 RRAGAQ7L523 313 aa5.38□□□□□ -1.55
LINC00560-201ENST00000564593 VRK3Q8IV63 474 aa5.38□□□□□ -1.55
LINC00560-201ENST00000564593 P3H2Q8IVL5 708 aa5.38□□□□□ -1.55
LINC00560-201ENST00000564593 FTSJ3Q8IY81 847 aaKnown RBP5.38□□□□□ -1.55
LINC00560-201ENST00000564593 RP9Q8TA86 221 aaKnown RBP5.38□□□□□ -1.55
LINC00560-201ENST00000564593 CTHRC1Q96CG8 243 aa5.38□□□□□ -1.55
LINC00560-201ENST00000564593 COQ10AQ96MF6 247 aa5.38□□□□□ -1.55
LINC00560-201ENST00000564593 TTPALQ9BTX7 342 aa5.38□□□□□ -1.55
LINC00560-201ENST00000564593 ELAC1Q9H777 363 aaKnown RBP5.38□□□□□ -1.55
LINC00560-201ENST00000564593 SERTAD4Q9NUC0 356 aa5.38□□□□□ -1.55
LINC00560-201ENST00000564593 SYBUQ9NX95 663 aa5.38□□□□□ -1.55
LINC00560-201ENST00000564593 C9orf78Q9NZ63 289 aaPredicted RBP5.38□□□□□ -1.55
LINC00560-201ENST00000564593 FAM90A18PA6NE21 464 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 FAM90A16PA6NEW6 464 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 FAM90A9PA6NNJ1 464 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 FAM90A5PA8MXJ8 464 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 NPIPB8E9PQR5 432 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 EIF3FO00303 357 aaPredicted RBP5.37□□□□□ -1.55
LINC00560-201ENST00000564593 MATN3O15232 486 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 RPP40O75818 363 aaKnown RBP5.37□□□□□ -1.55
LINC00560-201ENST00000564593 ESRRBO95718 433 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 FAM90A15PP0C7V4 464 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 FAM90A14PP0C7W9 464 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 NDUFB7P17568 137 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 ENGP17813 658 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 TGM1P22735 817 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 CTGFP29279 349 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 CYP2C18P33260 490 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 ADD2P35612 726 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 COL4A3Q01955 1670 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 SEMA3BQ13214 749 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 CUL4BQ13620 913 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 KCNJ12Q14500 433 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 AASDHQ4L235 1098 aaPredicted RBP5.37□□□□□ -1.55
LINC00560-201ENST00000564593 FBXO47Q5MNV8 452 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 CCDC144NLQ6NUI1 221 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 Q6YL49 198 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 Q6ZWC4 215 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 KRT27Q7Z3Y8 459 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 TRABD2AQ86V40 505 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 CLASRPQ8N2M8 674 aaKnown RBP5.37□□□□□ -1.55
LINC00560-201ENST00000564593 PAF1Q8N7H5 531 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 SLC16A11Q8NCK7 471 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 NGDNQ8NEJ9 315 aaKnown RBP5.37□□□□□ -1.55
LINC00560-201ENST00000564593 OR6Y1Q8NGX8 325 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 SPPL3Q8TCT6 385 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 OVCA2Q8WZ82 227 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 LINC00476Q8WZB0 136 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 RILPL2Q969X0 211 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 C3orf49Q96BT1 292 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 UBXN10Q96LJ8 280 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 VPS16Q9H269 839 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 MGAT4CQ9UBM8 478 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 NFU1Q9UMS0 254 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 C19orf53Q9UNZ5 99 aaPredicted RBP5.37□□□□□ -1.55
LINC00560-201ENST00000564593 CNTN6Q9UQ52 1028 aa5.37□□□□□ -1.55
LINC00560-201ENST00000564593 CCDC151A5D8V7 595 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 EFCAB8A8MWE9 144 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 KIF28PB7ZC32 967 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 B9A039 149 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 H0Y3Z8 333 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 CTIFO43310 598 aaKnown RBP5.36□□□□□ -1.55
LINC00560-201ENST00000564593 NARSO43776 548 aaKnown RBP5.36□□□□□ -1.55
LINC00560-201ENST00000564593 TTLL1O95922 423 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 JUPP14923 745 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 MCM5P33992 734 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 MPLP40238 635 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 GRIA3P42263 894 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 AARSP49588 968 aaKnown RBP eCLIP5.36□□□□□ -1.55
LINC00560-201ENST00000564593 POU5F1BQ06416 359 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 TBC1D25Q3MII6 688 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 FAM90A2PQ658T7 463 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 PTCHD4Q6ZW05 846 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 WDR53Q7Z5U6 358 aaPredicted RBP5.36□□□□□ -1.55
LINC00560-201ENST00000564593 PEG10Q86TG7 708 aaKnown RBP5.36□□□□□ -1.55
LINC00560-201ENST00000564593 C2CD5Q86YS7 1000 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 ACTRT2Q8TDY3 377 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 SLC22A17Q8WUG5 538 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 AFG1LQ8WV93 481 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 HMGB4Q8WW32 186 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 MCRS1Q96EZ8 462 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 SORCS2Q96PQ0 1159 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 NAP1L4Q99733 375 aaKnown RBP5.36□□□□□ -1.55
LINC00560-201ENST00000564593 ZNF747Q9BV97 191 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 DUSP22Q9NRW4 184 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 DLL3Q9NYJ7 618 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 AMFRQ9UKV5 643 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 ASAP1Q9ULH1 1129 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 PCDHB7Q9Y5E2 793 aa5.36□□□□□ -1.55
LINC00560-201ENST00000564593 EPN1Q9Y6I3 576 aaPredicted RBP5.36□□□□□ -1.55
LINC00560-201ENST00000564593 QSOX1O00391 747 aa5.35□□□□□ -1.55
LINC00560-201ENST00000564593 CA12O43570 354 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms