RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 LCP1P13796 627 aa14.04□□□□□ -0.16
CLK3-216ENST00000564468 CDK11BP21127 795 aaKnown RBP14.04□□□□□ -0.16
CLK3-216ENST00000564468 EIF2DP41214 584 aaKnown RBP14.04□□□□□ -0.16
CLK3-216ENST00000564468 CXCL12P48061 93 aa14.04□□□□□ -0.16
CLK3-216ENST00000564468 CSTF1Q05048 431 aaKnown RBP14.04□□□□□ -0.16
CLK3-216ENST00000564468 TYRO3Q06418 890 aa14.04□□□□□ -0.16
CLK3-216ENST00000564468 CAVIN1Q6NZI2 390 aaKnown RBP14.04□□□□□ -0.16
CLK3-216ENST00000564468 PMF1Q6P1K2 205 aa14.04□□□□□ -0.16
CLK3-216ENST00000564468 C11orf57Q6ZUT1 292 aaPredicted RBP14.04□□□□□ -0.16
CLK3-216ENST00000564468 NUDT18Q6ZVK8 323 aa14.04□□□□□ -0.16
CLK3-216ENST00000564468 KIAA2013Q8IYS2 634 aa14.04□□□□□ -0.16
CLK3-216ENST00000564468 STK32AQ8WU08 396 aa14.04□□□□□ -0.16
CLK3-216ENST00000564468 RMDN1Q96DB5 314 aa14.04□□□□□ -0.16
CLK3-216ENST00000564468 ZSWIM1Q9BR11 485 aa14.04□□□□□ -0.16
CLK3-216ENST00000564468 TRIM62Q9BVG3 475 aa14.04□□□□□ -0.16
CLK3-216ENST00000564468 FANCLQ9NW38 375 aa14.04□□□□□ -0.16
CLK3-216ENST00000564468 MARCH2Q9P0N8 246 aa14.04□□□□□ -0.16
CLK3-216ENST00000564468 RASAL2Q9UJF2 1139 aa14.04□□□□□ -0.16
CLK3-216ENST00000564468 NUDT5Q9UKK9 219 aa14.04□□□□□ -0.16
CLK3-216ENST00000564468 DAAM1Q9Y4D1 1078 aa14.04□□□□□ -0.16
CLK3-216ENST00000564468 GPD2P43304 727 aa14.03□□□□□ -0.16
CLK3-216ENST00000564468 RGS7P49802 495 aa14.03□□□□□ -0.16
CLK3-216ENST00000564468 SNX16P57768 344 aa14.03□□□□□ -0.16
CLK3-216ENST00000564468 DAOAP59103 153 aa14.03□□□□□ -0.16
CLK3-216ENST00000564468 EFEMP1Q12805 493 aa14.03□□□□□ -0.16
CLK3-216ENST00000564468 KRT31Q15323 416 aa14.03□□□□□ -0.16
CLK3-216ENST00000564468 LY6G5CQ5SRR4 150 aa14.03□□□□□ -0.16
CLK3-216ENST00000564468 BSPRYQ5W0U4 402 aa14.03□□□□□ -0.16
CLK3-216ENST00000564468 FSTL4Q6MZW2 842 aa14.03□□□□□ -0.16
CLK3-216ENST00000564468 RHBDF2Q6PJF5 856 aa14.03□□□□□ -0.16
CLK3-216ENST00000564468 MIB1Q86YT6 1006 aa14.03□□□□□ -0.16
CLK3-216ENST00000564468 BBS7Q8IWZ6 715 aa14.03□□□□□ -0.16
CLK3-216ENST00000564468 RUBCNQ92622 972 aa14.03□□□□□ -0.16
CLK3-216ENST00000564468 CHFRQ96EP1 664 aa14.03□□□□□ -0.16
CLK3-216ENST00000564468 VPS16Q9H269 839 aa14.03□□□□□ -0.16
CLK3-216ENST00000564468 SIX2Q9NPC8 291 aa14.03□□□□□ -0.16
CLK3-216ENST00000564468 PLCB1Q9NQ66 1216 aa14.03□□□□□ -0.16
CLK3-216ENST00000564468 PRMT8Q9NR22 394 aaPredicted RBP14.03□□□□□ -0.16
CLK3-216ENST00000564468 SPHK2Q9NRA0 654 aa14.03□□□□□ -0.16
CLK3-216ENST00000564468 ST7Q9NRC1 585 aa14.03□□□□□ -0.16
CLK3-216ENST00000564468 RBM12Q9NTZ6 932 aaKnown RBP14.03□□□□□ -0.16
CLK3-216ENST00000564468 TAB2Q9NYJ8 693 aa14.03□□□□□ -0.16
CLK3-216ENST00000564468 NCOR2Q9Y618 2525 aa14.02□□□□□ -0.16
CLK3-216ENST00000564468 CACNA1BQ00975 2339 aa14.02□□□□□ -0.16
CLK3-216ENST00000564468 SMTNL1A8MU46 457 aa14.02□□□□□ -0.17
CLK3-216ENST00000564468 BECN2A8MW95 431 aa14.02□□□□□ -0.17
CLK3-216ENST00000564468 MDM4O15151 490 aa14.02□□□□□ -0.17
CLK3-216ENST00000564468 STC2O76061 302 aa14.02□□□□□ -0.17
CLK3-216ENST00000564468 PAPSS2O95340 614 aaPredicted RBP14.02□□□□□ -0.17
CLK3-216ENST00000564468 SDHBP21912 280 aa14.02□□□□□ -0.17
CLK3-216ENST00000564468 KRT9P35527 623 aa14.02□□□□□ -0.17
CLK3-216ENST00000564468 CHKAP35790 457 aa14.02□□□□□ -0.17
CLK3-216ENST00000564468 RPL34P49207 117 aaKnown RBP14.02□□□□□ -0.17
CLK3-216ENST00000564468 KCNMA1Q12791 1236 aa14.02□□□□□ -0.17
CLK3-216ENST00000564468 RAPGEF1Q13905 1077 aa14.02□□□□□ -0.17
CLK3-216ENST00000564468 KLHL40Q2TBA0 621 aa14.02□□□□□ -0.17
CLK3-216ENST00000564468 KLHDC7AQ5VTJ3 777 aa14.02□□□□□ -0.17
CLK3-216ENST00000564468 MAML2Q8IZL2 1156 aaPredicted RBP14.02□□□□□ -0.17
CLK3-216ENST00000564468 ATRIPQ8WXE1 791 aa14.02□□□□□ -0.17
CLK3-216ENST00000564468 PLD4Q96BZ4 506 aa14.02□□□□□ -0.17
CLK3-216ENST00000564468 NOX5Q96PH1 765 aa14.02□□□□□ -0.17
CLK3-216ENST00000564468 XPO6Q96QU8 1125 aaKnown RBP14.02□□□□□ -0.17
CLK3-216ENST00000564468 PNKPQ96T60 521 aa14.02□□□□□ -0.17
CLK3-216ENST00000564468 LSM14BQ9BX40 385 aaKnown RBP14.02□□□□□ -0.17
CLK3-216ENST00000564468 ZSCAN32Q9NX65 697 aa14.02□□□□□ -0.17
CLK3-216ENST00000564468 WDR35Q9P2L0 1181 aa14.02□□□□□ -0.17
CLK3-216ENST00000564468 PCDHGC3Q9UN70 934 aa14.02□□□□□ -0.17
CLK3-216ENST00000564468 HBS1LQ9Y450 684 aaKnown RBP14.02□□□□□ -0.17
CLK3-216ENST00000564468 CEP83Q9Y592 693 aa14.02□□□□□ -0.17
CLK3-216ENST00000564468 PCDHGA2Q9Y5H1 932 aa14.02□□□□□ -0.17
CLK3-216ENST00000564468 EPG5Q9HCE0 2579 aa14.02□□□□□ -0.17
CLK3-216ENST00000564468 TPRP12270 2363 aaKnown RBP14.02□□□□□ -0.17
CLK3-216ENST00000564468 SPAG17Q6Q759 2223 aa14.01□□□□□ -0.17
CLK3-216ENST00000564468 SLC12A8A0AV02 714 aa14.01□□□□□ -0.17
CLK3-216ENST00000564468 YJEFN3A6XGL0 299 aa14.01□□□□□ -0.17
CLK3-216ENST00000564468 CHURC1-FNTBB4DL54 471 aa14.01□□□□□ -0.17
CLK3-216ENST00000564468 E7ENQ6 273 aa14.01□□□□□ -0.17
CLK3-216ENST00000564468 FOXN3O00409 490 aaPredicted RBP14.01□□□□□ -0.17
CLK3-216ENST00000564468 SCAMP3O14828 347 aaKnown RBP14.01□□□□□ -0.17
CLK3-216ENST00000564468 HOXC11O43248 304 aaPredicted RBP14.01□□□□□ -0.17
CLK3-216ENST00000564468 EGFP01133 1207 aa14.01□□□□□ -0.17
CLK3-216ENST00000564468 CALCAP01258 141 aa14.01□□□□□ -0.17
CLK3-216ENST00000564468 LTFP02788 710 aa14.01□□□□□ -0.17
CLK3-216ENST00000564468 APODP05090 189 aa14.01□□□□□ -0.17
CLK3-216ENST00000564468 UCHL3P15374 230 aa14.01□□□□□ -0.17
CLK3-216ENST00000564468 OPRD1P41143 372 aa14.01□□□□□ -0.17
CLK3-216ENST00000564468 COPB1P53618 953 aaKnown RBP14.01□□□□□ -0.17
CLK3-216ENST00000564468 APBA1Q02410 837 aa14.01□□□□□ -0.17
CLK3-216ENST00000564468 DRAP1Q14919 205 aaPredicted RBP14.01□□□□□ -0.17
CLK3-216ENST00000564468 ANO4Q32M45 955 aa14.01□□□□□ -0.17
CLK3-216ENST00000564468 DENND1BQ6P3S1 775 aa14.01□□□□□ -0.17
CLK3-216ENST00000564468 Q6ZNB5 142 aa14.01□□□□□ -0.17
CLK3-216ENST00000564468 BHLHA9Q7RTU4 235 aa14.01□□□□□ -0.17
CLK3-216ENST00000564468 FAM71AQ8IYT1 594 aa14.01□□□□□ -0.17
CLK3-216ENST00000564468 ACDQ96AP0 544 aa14.01□□□□□ -0.17
CLK3-216ENST00000564468 BPIFA3Q9BQP9 254 aa14.01□□□□□ -0.17
CLK3-216ENST00000564468 SLC4A5Q9BY07 1137 aa14.01□□□□□ -0.17
CLK3-216ENST00000564468 STK33Q9BYT3 514 aa14.01□□□□□ -0.17
CLK3-216ENST00000564468 LHX5Q9H2C1 402 aa14.01□□□□□ -0.17
CLK3-216ENST00000564468 PDCL3Q9H2J4 239 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms