RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 WDTC1Q8N5D0 677 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 ZBTB44Q8NCP5 570 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 OR56A3Q8NH54 315 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 GABPB2Q8TAK5 448 aaPredicted RBP5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 METTL6Q8TCB7 284 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 BRIX1Q8TDN6 353 aaKnown RBP5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 ASB15Q8WXK1 588 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 KCNN1Q92952 543 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 KTI12Q96EK9 354 aaPredicted RBP5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 TBC1D32Q96NH3 1257 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 PTCHD1Q96NR3 888 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 NOL10Q9BSC4 688 aaKnown RBP5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 NTPCRQ9BSD7 190 aaKnown RBP5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 MRPL46Q9H2W6 279 aaKnown RBP5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 COPS7BQ9H9Q2 264 aaPredicted RBP5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 AP5S1Q9NUS5 200 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 FAM105AQ9NUU6 356 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 PIM2Q9P1W9 311 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 TSPYL4Q9UJ04 414 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 KCND3Q9UK17 655 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 CCNL1Q9UK58 526 aaPredicted RBP5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 DERAQ9Y315 318 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 DTNAQ9Y4J8 743 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 TRIM17Q9Y577 477 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 LTN1O94822 1766 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 A8MXE2 369 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 NUDT19A8MXV4 375 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 MUSKO15146 869 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 FGF10O15520 208 aaPredicted RBP5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 KLK10O43240 276 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 TGFB1I1O43294 461 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 HNRNPRO43390 633 aaKnown RBP5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 ENTPD3O75355 529 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 CYP2A6P11509 494 aaPredicted RBP5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 EEF2P13639 858 aaKnown RBP5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 EGR1P18146 543 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 EPHA8P29322 1005 aaPredicted RBP5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 HSPA4P34932 840 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 SLC12A3P55017 1021 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 SESN2P58004 480 aaPredicted RBP5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 LASP1Q14847 261 aaKnown RBP5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 ANKRD1Q15327 319 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 MAPKAPK3Q16644 382 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 HSP90AB3PQ58FF7 597 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 GARNL3Q5VVW2 1013 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 ARL6IP4Q66PJ3 421 aaKnown RBP5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 ZNF790Q6PG37 636 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 TRAT1Q6PIZ9 186 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 KCTD1Q719H9 257 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 KANSL1Q7Z3B3 1105 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 PPP1R42Q7Z4L9 355 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 ADGRA1Q86SQ6 560 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 NLGN4XQ8N0W4 816 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 NLGN2Q8NFZ4 835 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 UHMK1Q8TAS1 419 aaKnown RBP5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 ZNF384Q8TF68 577 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 GRK7Q8WTQ7 553 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 SLC22A17Q8WUG5 538 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 GAB3Q8WWW8 586 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 C3orf49Q96BT1 292 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 PGAP3Q96FM1 320 aaPredicted RBP5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 C16orf45Q96MC5 204 aaPredicted RBP5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 GBP4Q96PP9 640 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 ABHD1Q96SE0 405 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 THUMPD3Q9BV44 507 aaKnown RBP5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 BRD8Q9H0E9 1235 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 ASCC2Q9H1I8 757 aaPredicted RBP5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 TNMDQ9H2S6 317 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 THAP9Q9H5L6 903 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 RMI1Q9H9A7 625 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 PCDHB16Q9NRJ7 776 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 SNX15Q9NRS6 342 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 RBM12Q9NTZ6 932 aaKnown RBP5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 INTS10Q9NVR2 710 aaKnown RBP5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 HCFC1R1Q9NWW0 138 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 TAB2Q9NYJ8 693 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 TFCP2L1Q9NZI6 479 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 ARHGAP20Q9P2F6 1191 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 MORF4L1Q9UBU8 362 aa5.56□□□□□ -1.52
VPS35P1-201ENST00000563400 TRBV23OR9-2A0A075B6M9 112 aa5.55□□□□□ -1.52
VPS35P1-201ENST00000563400 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.55□□□□□ -1.52
VPS35P1-201ENST00000563400 URADA6NGE7 173 aa5.55□□□□□ -1.52
VPS35P1-201ENST00000563400 PCDH17O14917 1159 aa5.55□□□□□ -1.52
VPS35P1-201ENST00000563400 CYP27B1O15528 508 aa5.55□□□□□ -1.52
VPS35P1-201ENST00000563400 PROM1O43490 865 aa5.55□□□□□ -1.52
VPS35P1-201ENST00000563400 SMPD2O60906 423 aa5.55□□□□□ -1.52
VPS35P1-201ENST00000563400 PPP1R11O60927 126 aaPredicted RBP5.55□□□□□ -1.52
VPS35P1-201ENST00000563400 PPFIA2O75334 1257 aa5.55□□□□□ -1.52
VPS35P1-201ENST00000563400 SEC22BO75396 215 aa5.55□□□□□ -1.52
VPS35P1-201ENST00000563400 ABHD16AO95870 558 aa5.55□□□□□ -1.52
VPS35P1-201ENST00000563400 PRLP01236 227 aa5.55□□□□□ -1.52
VPS35P1-201ENST00000563400 GLI1P08151 1106 aa5.55□□□□□ -1.52
VPS35P1-201ENST00000563400 NFICP08651 508 aa5.55□□□□□ -1.52
VPS35P1-201ENST00000563400 DLDP09622 509 aaKnown RBP5.55□□□□□ -1.52
VPS35P1-201ENST00000563400 CKBP12277 381 aa5.55□□□□□ -1.52
VPS35P1-201ENST00000563400 TBXAS1P24557 533 aaPredicted RBP5.55□□□□□ -1.52
VPS35P1-201ENST00000563400 AKT1P31749 480 aa5.55□□□□□ -1.52
VPS35P1-201ENST00000563400 RFC4P35249 363 aa5.55□□□□□ -1.52
VPS35P1-201ENST00000563400 BUD31P41223 144 aaPredicted RBP5.55□□□□□ -1.52
VPS35P1-201ENST00000563400 RGS3P49796 1198 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms