RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 DARS2Q6PI48 645 aaKnown RBP7.81□□□□□ -1.16
VPS39-204ENST00000561818 ZDHHC24Q6UX98 284 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 MICALCLQ6ZW33 695 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 BNIPLQ7Z465 357 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 SCUBE3Q8IX30 993 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 FAM126BQ8IXS8 530 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 GSPT2Q8IYD1 628 aaKnown RBP7.81□□□□□ -1.16
VPS39-204ENST00000561818 EMC1Q8N766 993 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 MCUQ8NE86 351 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 PDZD8Q8NEN9 1154 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 GABPB2Q8TAK5 448 aaPredicted RBP7.81□□□□□ -1.16
VPS39-204ENST00000561818 ZNF296Q8WUU4 475 aaPredicted RBP7.81□□□□□ -1.16
VPS39-204ENST00000561818 OVCA2Q8WZ82 227 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 CENPTQ96BT3 561 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 ALKBH8Q96BT7 664 aaKnown RBP7.81□□□□□ -1.16
VPS39-204ENST00000561818 PCED1BQ96HM7 432 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 FAM84AQ96KN4 292 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 C8orf48Q96LL4 319 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 HAPLN3Q96S86 360 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 RBM15Q96T37 977 aaKnown RBP eCLIP7.81□□□□□ -1.16
VPS39-204ENST00000561818 PLCD4Q9BRC7 762 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 SNRNP25Q9BV90 132 aaKnown RBP7.81□□□□□ -1.16
VPS39-204ENST00000561818 CAPS2Q9BXY5 557 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 NSRP1Q9H0G5 558 aaKnown RBP7.81□□□□□ -1.16
VPS39-204ENST00000561818 CATSPERBQ9H7T0 1116 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 NRDE2Q9H7Z3 1164 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 PCDH18Q9HCL0 1135 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 TRMT13Q9NUP7 481 aaKnown RBP7.81□□□□□ -1.16
VPS39-204ENST00000561818 CHORDC1Q9UHD1 332 aaPredicted RBP7.81□□□□□ -1.16
VPS39-204ENST00000561818 TRHDEQ9UKU6 1024 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 DNPEPQ9ULA0 475 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 SSX2IPQ9Y2D8 614 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 TRIM17Q9Y577 477 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 SCN1AP35498 2009 aa7.81□□□□□ -1.16
VPS39-204ENST00000561818 TRIP12Q14669 1992 aaPredicted RBP7.8□□□□□ -1.16
VPS39-204ENST00000561818 C5orf60A6NFR6 353 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 ZSCAN5CA6NGD5 496 aaPredicted RBP7.8□□□□□ -1.16
VPS39-204ENST00000561818 CASTOR2A6NHX0 329 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 E7EVH7 732 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 H3BQF6 201 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 H7C0C1 242 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 PPEF2O14830 753 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 MAP3K13O43283 966 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 GCATO75600 419 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 IFNB1P01574 187 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 CXCL10P02778 98 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 FAM153BP0C7A2 387 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 FGFR1P11362 822 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 LCP1P13796 627 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 TPSB2P20231 275 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 CYP2F1P24903 491 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 LMO2P25791 158 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 L1CAMP32004 1257 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 CCR1P32246 355 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 ATP5OP48047 213 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 PPP3CCP48454 512 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 CTCFP49711 727 aaPredicted RBP7.8□□□□□ -1.16
VPS39-204ENST00000561818 VEGFBP49765 207 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 SLC18A1P54219 525 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 MAP3K7CLP57077 242 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 PPP2R2AP63151 447 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 ATP11AP98196 1134 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 SNX1Q13596 522 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 PPP2R5DQ14738 602 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 TPSAB1Q15661 275 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 SMTNL2Q2TAL5 461 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 FAM153CQ494X1 144 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 TIGD5Q53EQ6 642 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 DCAF6Q58WW2 860 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 ZC3H12AQ5D1E8 599 aaKnown RBP7.8□□□□□ -1.16
VPS39-204ENST00000561818 RNASEH2BQ5TBB1 312 aaKnown RBP7.8□□□□□ -1.16
VPS39-204ENST00000561818 TMCO4Q5TGY1 634 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 TIGD7Q6NT04 549 aaPredicted RBP7.8□□□□□ -1.16
VPS39-204ENST00000561818 B4GALNT4Q76KP1 1039 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 MON1AQ86VX9 555 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 COLGALT2Q8IYK4 626 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 PLD5Q8N7P1 536 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 TSEN2Q8NCE0 465 aaKnown RBP7.8□□□□□ -1.16
VPS39-204ENST00000561818 RNF169Q8NCN4 708 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 RNF139Q8WU17 664 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 TFB1MQ8WVM0 346 aaKnown RBP7.8□□□□□ -1.16
VPS39-204ENST00000561818 ATG4AQ8WYN0 398 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 MYLPFQ96A32 169 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 ELMO3Q96BJ8 720 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 SPATA17Q96L03 361 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 QKIQ96PU8 341 aaKnown RBP eCLIP7.8□□□□□ -1.16
VPS39-204ENST00000561818 OSBPL2Q9H1P3 480 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 DPEP3Q9H4B8 488 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 DHX35Q9H5Z1 703 aaKnown RBP7.8□□□□□ -1.16
VPS39-204ENST00000561818 WDCPQ9H6R7 721 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 GOLGA2P5Q9HBQ8 144 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 CLIC5Q9NZA1 410 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 PCSK1NQ9UHG2 260 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 FAM153AQ9UHL3 310 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 ADAM28Q9UKQ2 775 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 FZD10Q9ULW2 581 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 INPP5FQ9Y2H2 1132 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 NR2E1Q9Y466 385 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 PCDHB5Q9Y5E4 795 aa7.8□□□□□ -1.16
VPS39-204ENST00000561818 USP3Q9Y6I4 520 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 97.2 ms