RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 PLCB3Q01970 1234 aa18.54■□□□□ 0.56
SNX1-208ENST00000559844 TFDP2Q14188 446 aa18.54■□□□□ 0.56
SNX1-208ENST00000559844 BOLA3Q53S33 107 aa18.54■□□□□ 0.56
SNX1-208ENST00000559844 C6orf118Q5T5N4 469 aa18.54■□□□□ 0.56
SNX1-208ENST00000559844 TRNP1Q6NT89 227 aa18.54■□□□□ 0.56
SNX1-208ENST00000559844 HIBCHQ6NVY1 386 aaPredicted RBP18.54■□□□□ 0.56
SNX1-208ENST00000559844 CD300LGQ6UXG3 332 aa18.54■□□□□ 0.56
SNX1-208ENST00000559844 SPRED2Q7Z698 418 aa18.54■□□□□ 0.56
SNX1-208ENST00000559844 MAP7D3Q8IWC1 876 aa18.54■□□□□ 0.56
SNX1-208ENST00000559844 BCL7CQ8WUZ0 217 aaPredicted RBP18.54■□□□□ 0.56
SNX1-208ENST00000559844 PGM2Q96G03 612 aa18.54■□□□□ 0.56
SNX1-208ENST00000559844 PIWIL1Q96J94 861 aaKnown RBP18.54■□□□□ 0.56
SNX1-208ENST00000559844 TBCBQ99426 244 aa18.54■□□□□ 0.56
SNX1-208ENST00000559844 MAK16Q9BXY0 300 aaKnown RBP18.54■□□□□ 0.56
SNX1-208ENST00000559844 NKX2-4Q9H2Z4 354 aa18.54■□□□□ 0.56
SNX1-208ENST00000559844 CDC42EP4Q9H3Q1 356 aaKnown RBP18.54■□□□□ 0.56
SNX1-208ENST00000559844 PCDH9Q9HC56 1237 aa18.54■□□□□ 0.56
SNX1-208ENST00000559844 ADAM28Q9UKQ2 775 aa18.54■□□□□ 0.56
SNX1-208ENST00000559844 VWA8A3KMH1 1905 aa18.54■□□□□ 0.56
SNX1-208ENST00000559844 MYO9BQ13459 2157 aa18.54■□□□□ 0.56
SNX1-208ENST00000559844 CYB561D2O14569 222 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 DNALI1O14645 258 aaPredicted RBP18.53■□□□□ 0.56
SNX1-208ENST00000559844 ENDOD1O94919 500 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 SHBGP04278 402 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 BRCC3P46736 316 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 IRAK1P51617 712 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 ARSEP51690 589 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 PDK2Q15119 407 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 P3H1Q32P28 736 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 SLC26A9Q7LBE3 791 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 RELL1Q8IUW5 271 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 SLC39A11Q8N1S5 342 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 HAUS1Q96CS2 278 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 IGSF21Q96ID5 467 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 C17orf80Q9BSJ5 609 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 ROPN1BQ9BZX4 212 aaPredicted RBP18.53■□□□□ 0.56
SNX1-208ENST00000559844 STMN4Q9H169 189 aaPredicted RBP18.53■□□□□ 0.56
SNX1-208ENST00000559844 ROPN1Q9HAT0 212 aaPredicted RBP18.53■□□□□ 0.56
SNX1-208ENST00000559844 SPG21Q9NZD8 308 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 NOVA2Q9UNW9 492 aaKnown RBP18.53■□□□□ 0.56
SNX1-208ENST00000559844 RWDD3Q9Y3V2 267 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 CARNS1A5YM72 827 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 I3L4J1 428 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 APOC4-APOC2K7ER74 178 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 GRAP2O75791 330 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 APOC2P02655 101 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 IVLP07476 585 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 DNAJB2P25686 324 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 RDXP35241 583 aaKnown RBP18.53■□□□□ 0.56
SNX1-208ENST00000559844 CHKAP35790 457 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 PPM1AP35813 382 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 PTPN9P43378 593 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 SMAD3P84022 425 aaKnown RBP18.53■□□□□ 0.56
SNX1-208ENST00000559844 OTUD4Q01804 1114 aaKnown RBP18.53■□□□□ 0.56
SNX1-208ENST00000559844 C15orf59Q2T9L4 293 aaPredicted RBP18.53■□□□□ 0.56
SNX1-208ENST00000559844 VSIG1Q86XK7 387 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 SCUBE3Q8IX30 993 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 B3GALNT2Q8NCR0 500 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 ACTL9Q8TC94 416 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 CFAP57Q96MR6 1250 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 PEBP4Q96S96 227 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 HNRNPABQ99729 332 aaKnown RBP18.53■□□□□ 0.56
SNX1-208ENST00000559844 CALN1Q9BXU9 219 aa18.53■□□□□ 0.56
SNX1-208ENST00000559844 TSC2P49815 1807 aa18.52■□□□□ 0.56
SNX1-208ENST00000559844 SGK1O00141 431 aa18.52■□□□□ 0.56
SNX1-208ENST00000559844 XPO1O14980 1071 aaKnown RBP18.52■□□□□ 0.56
SNX1-208ENST00000559844 HCRTO43612 131 aa18.52■□□□□ 0.56
SNX1-208ENST00000559844 BMPR1AP36894 532 aa18.52■□□□□ 0.56
SNX1-208ENST00000559844 ATP1A2P50993 1020 aa18.52■□□□□ 0.56
SNX1-208ENST00000559844 CDR1P51861 262 aa18.52■□□□□ 0.56
SNX1-208ENST00000559844 CDH6P55285 790 aa18.52■□□□□ 0.56
SNX1-208ENST00000559844 DYNLT1P63172 113 aa18.52■□□□□ 0.56
SNX1-208ENST00000559844 ZSCAN26Q16670 478 aa18.52■□□□□ 0.56
SNX1-208ENST00000559844 CDO1Q16878 200 aa18.52■□□□□ 0.56
SNX1-208ENST00000559844 TIGD5Q53EQ6 642 aa18.52■□□□□ 0.56
SNX1-208ENST00000559844 PPP2R2DQ66LE6 453 aa18.52■□□□□ 0.56
SNX1-208ENST00000559844 PCGF5Q86SE9 256 aa18.52■□□□□ 0.56
SNX1-208ENST00000559844 OSTM1Q86WC4 334 aa18.52■□□□□ 0.56
SNX1-208ENST00000559844 TMEM86AQ8N2M4 240 aa18.52■□□□□ 0.56
SNX1-208ENST00000559844 ZCCHC9Q8N567 271 aaKnown RBP18.52■□□□□ 0.56
SNX1-208ENST00000559844 SLC2A14Q8TDB8 520 aa18.52■□□□□ 0.56
SNX1-208ENST00000559844 FAM172AQ8WUF8 416 aa18.52■□□□□ 0.56
SNX1-208ENST00000559844 KHSRPQ92945 711 aaKnown RBP eCLIP18.52■□□□□ 0.561e-6■□□□□ 9.7
SNX1-208ENST00000559844 TMEM169Q96HH4 297 aa18.52■□□□□ 0.56
SNX1-208ENST00000559844 SLC28A3Q9HAS3 691 aa18.52■□□□□ 0.56
SNX1-208ENST00000559844 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.52■□□□□ 0.56
SNX1-208ENST00000559844 TPX2Q9ULW0 747 aaKnown RBP18.52■□□□□ 0.56
SNX1-208ENST00000559844 CHD9Q3L8U1 2897 aa18.52■□□□□ 0.56
SNX1-208ENST00000559844 CHD7Q9P2D1 2997 aa18.52■□□□□ 0.55
SNX1-208ENST00000559844 EIF3HO15372 352 aaKnown RBP eCLIP18.51■□□□□ 0.55
SNX1-208ENST00000559844 CD48P09326 243 aa18.51■□□□□ 0.55
SNX1-208ENST00000559844 KRT81Q14533 505 aa18.51■□□□□ 0.55
SNX1-208ENST00000559844 TAF5Q15542 800 aa18.51■□□□□ 0.55
SNX1-208ENST00000559844 SH3PXD2AQ5TCZ1 1133 aa18.51■□□□□ 0.55
SNX1-208ENST00000559844 FUT10Q6P4F1 479 aa18.51■□□□□ 0.55
SNX1-208ENST00000559844 DSTYKQ6XUX3 929 aa18.51■□□□□ 0.55
SNX1-208ENST00000559844 CYP4V2Q6ZWL3 525 aaPredicted RBP18.51■□□□□ 0.55
SNX1-208ENST00000559844 TLCD1Q96CP7 247 aa18.51■□□□□ 0.55
SNX1-208ENST00000559844 TGS1Q96RS0 853 aaKnown RBP18.51■□□□□ 0.55
SNX1-208ENST00000559844 LPIN3Q9BQK8 851 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms