RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 SHOC2Q9UQ13 582 aa13.16□□□□□ -0.3
SHMT2-229ENST00000557348 H0YGN5 161 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 DNALI1O14645 258 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-229ENST00000557348 GRAP2O75791 330 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 AP1G2O75843 785 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 SCTRP47872 440 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 CDK7P50613 346 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 ATP1A2P50993 1020 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 ITGA8P53708 1063 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 ATP11AP98196 1134 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 OTUD4Q01804 1114 aaKnown RBP13.15□□□□□ -0.3
SHMT2-229ENST00000557348 ADCY2Q08462 1091 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 DPYSL3Q14195 570 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 LLGL1Q15334 1064 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 UAP1Q16222 522 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-229ENST00000557348 C15orf59Q2T9L4 293 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-229ENST00000557348 INTS6LQ5JSJ4 861 aaKnown RBP13.15□□□□□ -0.3
SHMT2-229ENST00000557348 RAB41Q5JT25 222 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 OVOS1Q6IE37 1185 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 TRNP1Q6NT89 227 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 TRAF7Q6Q0C0 670 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 C4orf50Q6ZRC1 276 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 C3orf58Q8NDZ4 430 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 RSAD2Q8WXG1 361 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 FAM149B1Q96BN6 582 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 FAF2Q96CS3 445 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 PCED1BQ96HM7 432 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 PIWIL1Q96J94 861 aaKnown RBP13.15□□□□□ -0.3
SHMT2-229ENST00000557348 B3GNT5Q9BYG0 378 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 ROPN1BQ9BZX4 212 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-229ENST00000557348 ROPN1Q9HAT0 212 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-229ENST00000557348 CSNK1G1Q9HCP0 422 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 INPP5FQ9Y2H2 1132 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 TRIM17Q9Y577 477 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 NFS1Q9Y697 457 aa13.15□□□□□ -0.3
SHMT2-229ENST00000557348 SGK1O00141 431 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 PIK3R2O00459 728 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 APOL1O14791 398 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 GABBR2O75899 941 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 LUC7L3O95232 432 aaKnown RBP13.15□□□□□ -0.31
SHMT2-229ENST00000557348 ACAT1P24752 427 aaKnown RBP13.15□□□□□ -0.31
SHMT2-229ENST00000557348 NR2C2P49116 596 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 TKTL1P51854 596 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 HDAC4P56524 1084 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 EIF3EP60228 445 aaKnown RBP13.15□□□□□ -0.31
SHMT2-229ENST00000557348 ROR1Q01973 937 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 DSC1Q08554 894 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 NOMO1Q15155 1222 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 IZUMO3Q5VZ72 239 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 SLC9A4Q6AI14 798 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 HIBCHQ6NVY1 386 aaPredicted RBP13.15□□□□□ -0.31
SHMT2-229ENST00000557348 FAM171BQ6P995 826 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 PAQR9Q6ZVX9 377 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 CYP4V2Q6ZWL3 525 aaPredicted RBP13.15□□□□□ -0.31
SHMT2-229ENST00000557348 BEND5Q7L4P6 421 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 ANKS1BQ7Z6G8 1248 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 TNS4Q8IZW8 715 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 ZCCHC9Q8N567 271 aaKnown RBP13.15□□□□□ -0.31
SHMT2-229ENST00000557348 CCDC197Q8NCU1 140 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 SEPT8Q92599 483 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 NT5C3BQ969T7 300 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 TTC25Q96NG3 672 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 FAM193BQ96PV7 902 aaPredicted RBP13.15□□□□□ -0.31
SHMT2-229ENST00000557348 SLC2A13Q96QE2 648 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 PEBP4Q96S96 227 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 FERMT1Q9BQL6 677 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 SNRNP25Q9BV90 132 aaKnown RBP13.15□□□□□ -0.31
SHMT2-229ENST00000557348 OSBPL7Q9BZF2 842 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 NSRP1Q9H0G5 558 aaKnown RBP13.15□□□□□ -0.31
SHMT2-229ENST00000557348 PCDH18Q9HCL0 1135 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 CD248Q9HCU0 757 aa13.15□□□□□ -0.31
SHMT2-229ENST00000557348 DMAP1Q9NPF5 467 aaPredicted RBP13.15□□□□□ -0.31
SHMT2-229ENST00000557348 BCCIPQ9P287 314 aaKnown RBP eCLIP13.15□□□□□ -0.31
SHMT2-229ENST00000557348 TPX2Q9ULW0 747 aaKnown RBP13.15□□□□□ -0.31
SHMT2-229ENST00000557348 SYN3O14994 580 aa13.14□□□□□ -0.31
SHMT2-229ENST00000557348 HCRTO43612 131 aa13.14□□□□□ -0.31
SHMT2-229ENST00000557348 F9P00740 461 aa13.14□□□□□ -0.31
SHMT2-229ENST00000557348 HSPA8P11142 646 aaKnown RBP13.14□□□□□ -0.31
SHMT2-229ENST00000557348 ARL4AP40617 200 aa13.14□□□□□ -0.31
SHMT2-229ENST00000557348 SULT1E1P49888 294 aa13.14□□□□□ -0.31
SHMT2-229ENST00000557348 LBX1P52954 281 aa13.14□□□□□ -0.31
SHMT2-229ENST00000557348 CLNS1AP54105 237 aaKnown RBP13.14□□□□□ -0.31
SHMT2-229ENST00000557348 MAP3K7CLP57077 242 aa13.14□□□□□ -0.31
SHMT2-229ENST00000557348 ADCY1Q08828 1119 aa13.14□□□□□ -0.31
SHMT2-229ENST00000557348 ZNF844Q08AG5 666 aa13.14□□□□□ -0.31
SHMT2-229ENST00000557348 SKIDA1Q1XH10 827 aa13.14□□□□□ -0.31
SHMT2-229ENST00000557348 P3H1Q32P28 736 aa13.14□□□□□ -0.31
SHMT2-229ENST00000557348 FAM126BQ8IXS8 530 aa13.14□□□□□ -0.31
SHMT2-229ENST00000557348 ABI1Q8IZP0 508 aa13.14□□□□□ -0.31
SHMT2-229ENST00000557348 ARMC2Q8NEN0 867 aa13.14□□□□□ -0.31
SHMT2-229ENST00000557348 ACSF2Q96CM8 615 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-229ENST00000557348 CHMP6Q96FZ7 201 aa13.14□□□□□ -0.31
SHMT2-229ENST00000557348 MRPL9Q9BYD2 267 aaKnown RBP13.14□□□□□ -0.31
SHMT2-229ENST00000557348 SF3B1O75533 1304 aaKnown RBP eCLIP13.13□□□□□ -0.315e-8■■■■■ 37.4
SHMT2-229ENST00000557348 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-229ENST00000557348 CCT8L1PA6NM43 557 aa13.13□□□□□ -0.31
SHMT2-229ENST00000557348 CAPN9O14815 690 aa13.13□□□□□ -0.31
SHMT2-229ENST00000557348 RIPK2O43353 540 aa13.13□□□□□ -0.31
SHMT2-229ENST00000557348 ATP2C2O75185 946 aa13.13□□□□□ -0.31
SHMT2-229ENST00000557348 ATP5DP30049 168 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms