RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 ASB2Q96Q27 587 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 PPP1R9BQ96SB3 815 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 EIF3CQ99613 913 aaKnown RBP13.41□□□□□ -0.26
SHMT2-227ENST00000557269 RPP25Q9BUL9 199 aaKnown RBP13.41□□□□□ -0.26
SHMT2-227ENST00000557269 TRIM7Q9C029 511 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 POPDC2Q9HBU9 364 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 GKN1Q9NS71 199 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 SMPD4Q9NXE4 827 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 GDE1Q9NZC3 331 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 CALCOCO1Q9P1Z2 691 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 WDR35Q9P2L0 1181 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 EPS15L1Q9UBC2 864 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 SFMBT1Q9UHJ3 866 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 PCDHA13Q9Y5I0 950 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 DOCK8Q8NF50 2099 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 A0A0U1RQJ8 604 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 ANKRD62A6NC57 917 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 RCCD1A6NED2 376 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 SIGLEC16A6NMB1 481 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 SOBPA7XYQ1 873 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 MSI1O43347 362 aaKnown RBP13.4□□□□□ -0.26
SHMT2-227ENST00000557269 DAB1O75553 588 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 CYP1A2P05177 515 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 GLI1P08151 1106 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 H2AFZP0C0S5 128 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 MBL2P11226 248 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-227ENST00000557269 KRT3P12035 628 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 CYLC1P35663 651 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-227ENST00000557269 ATP5C1P36542 298 aaKnown RBP13.4□□□□□ -0.26
SHMT2-227ENST00000557269 SLC7A9P82251 487 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 OGDHQ02218 1023 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 RAB6CQ53S08 254 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 TANGO2Q6ICL3 276 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 PPP1R2P3Q6NXS1 205 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 MSANTD2Q6P1R3 559 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 DNAJC24Q6P3W2 148 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 PARM1Q6UWI2 310 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 H2AFVQ71UI9 128 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 RSRC2Q7L4I2 434 aaKnown RBP13.4□□□□□ -0.26
SHMT2-227ENST00000557269 BEND5Q7L4P6 421 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 OTOP3Q7RTS5 596 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 MIB1Q86YT6 1006 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 DQX1Q8TE96 717 aaKnown RBP13.4□□□□□ -0.26
SHMT2-227ENST00000557269 RNF139Q8WU17 664 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 ATXN2LQ8WWM7 1075 aaKnown RBP13.4□□□□□ -0.26
SHMT2-227ENST00000557269 ATRIPQ8WXE1 791 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 RSAD2Q8WXG1 361 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 GOLGA1Q92805 767 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 SMARCD2Q92925 531 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 DESI2Q9BSY9 194 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 SELENOOQ9BVL4 669 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 KLF16Q9BXK1 252 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-227ENST00000557269 PLA2G2FQ9BZM2 168 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 RAB6CQ9H0N0 254 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 KCNF1Q9H3M0 494 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 RASAL2Q9UJF2 1139 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 USTQ9Y2C2 406 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 CPQQ9Y646 472 aa13.4□□□□□ -0.26
SHMT2-227ENST00000557269 TMEM191CA6NGB0 347 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 C2CD4BA6NLJ0 364 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 LOC730098B7Z3J9 87 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 CAPN9O14815 690 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 SCAMP3O14828 347 aaKnown RBP13.39□□□□□ -0.27
SHMT2-227ENST00000557269 CKMP06732 381 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 MYBL1P10243 752 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 PFKLP17858 780 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 WEE1P30291 646 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 NOS2P35228 1153 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 AVPR1AP37288 418 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 MATKP42679 507 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 MAGEA1P43355 309 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 GPC5P78333 572 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 AAK1Q2M2I8 961 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 CCDC14Q49A88 953 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 SH3PXD2AQ5TCZ1 1133 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 KLHDC10Q6PID8 442 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 TAC4Q86UU9 113 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 TDRD5Q8NAT2 981 aaKnown RBP13.39□□□□□ -0.27
SHMT2-227ENST00000557269 RXFP2Q8WXD0 754 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 FGF14Q92915 247 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 NT5C3BQ969T7 300 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 CFAP57Q96MR6 1250 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 MCEEQ96PE7 176 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 NPY6RQ99463 290 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 KXD1Q9BQD3 176 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 DDX23Q9BUQ8 820 aaKnown RBP13.39□□□□□ -0.27
SHMT2-227ENST00000557269 NACA2Q9H009 215 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 SMOC2Q9H3U7 446 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 TRPV4Q9HBA0 871 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 TDP1Q9NUW8 608 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 PARVAQ9NVD7 372 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.39□□□□□ -0.27
SHMT2-227ENST00000557269 MARCH2Q9P0N8 246 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 LIMD1Q9UGP4 676 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 DNMT3LQ9UJW3 386 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 ARHGAP26Q9UNA1 814 aa13.39□□□□□ -0.27
SHMT2-227ENST00000557269 SLC12A8A0AV02 714 aa13.38□□□□□ -0.27
SHMT2-227ENST00000557269 ANHXE9PGG2 379 aa13.38□□□□□ -0.27
SHMT2-227ENST00000557269 LEFTY2O00292 366 aa13.38□□□□□ -0.27
SHMT2-227ENST00000557269 GREM1O60565 184 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms