RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, human

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCFD1-223	ENST00000557076	CSGALNACT1	Q8TDX6	532 aa		5.22	□□□□□ -1.57
SCFD1-223	ENST00000557076	HNRNPLL	Q8WVV9	542 aa	Known RBP	5.22	□□□□□ -1.57
SCFD1-223	ENST00000557076	CRYGN	Q8WXF5	182 aa		5.22	□□□□□ -1.57
SCFD1-223	ENST00000557076	ING5	Q8WYH8	240 aa		5.22	□□□□□ -1.57
SCFD1-223	ENST00000557076	ALG3	Q92685	438 aa		5.22	□□□□□ -1.57
SCFD1-223	ENST00000557076	RNF34	Q969K3	372 aa		5.22	□□□□□ -1.57
SCFD1-223	ENST00000557076	TSPAN17	Q96FV3	270 aa		5.22	□□□□□ -1.57
SCFD1-223	ENST00000557076	LRIG1	Q96JA1	1093 aa		5.22	□□□□□ -1.57
SCFD1-223	ENST00000557076	ZSWIM3	Q96MP5	696 aa		5.22	□□□□□ -1.57
SCFD1-223	ENST00000557076	FERD3L	Q96RJ6	166 aa		5.22	□□□□□ -1.57
SCFD1-223	ENST00000557076	JPH2	Q9BR39	696 aa	Predicted RBP	5.22	□□□□□ -1.57
SCFD1-223	ENST00000557076	ZNF577	Q9BSK1	485 aa		5.22	□□□□□ -1.57
SCFD1-223	ENST00000557076	MTA3	Q9BTC8	594 aa		5.22	□□□□□ -1.57
SCFD1-223	ENST00000557076	GPR88	Q9GZN0	384 aa		5.22	□□□□□ -1.57
SCFD1-223	ENST00000557076	SLC8A2	Q9UPR5	921 aa		5.22	□□□□□ -1.57
SCFD1-223	ENST00000557076	IPP	Q9Y573	584 aa		5.22	□□□□□ -1.57
SCFD1-223	ENST00000557076	TENM4	Q6N022	2769 aa		5.22	□□□□□ -1.57
SCFD1-223	ENST00000557076	MYH6	P13533	1939 aa		5.22	□□□□□ -1.57
SCFD1-223	ENST00000557076	LAMA4	Q16363	1823 aa		5.22	□□□□□ -1.57
SCFD1-223	ENST00000557076	DOCK5	Q9H7D0	1870 aa		5.22	□□□□□ -1.57
SCFD1-223	ENST00000557076	SF3B1	O75533	1304 aa	Known RBP eCLIP	5.22	□□□□□ -1.57	4e-8	■■■■■ 68.9
SCFD1-223	ENST00000557076	MTCL1	Q9Y4B5	1905 aa	Known RBP	5.21	□□□□□ -1.57
SCFD1-223	ENST00000557076	PATJ	Q8NI35	1801 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	HEPACAM2	A8MVW5	462 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	SPECC1L-ADORA2A	F8WAN1	911 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	HIP1	O00291	1037 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	MEFV	O15553	781 aa	Predicted RBP	5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	ASAP2	O43150	1006 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	GLI4	P10075	376 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	PLA2G2A	P14555	144 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	IFNGR1	P15260	489 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	CEBPB	P17676	345 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	TACR1	P25103	407 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	CIITA	P33076	1130 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	VIPR2	P41587	438 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	SCNN1G	P51170	649 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	KPNA1	P52294	538 aa	Predicted RBP	5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	SIM1	P81133	766 aa	Predicted RBP	5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	SET	Q01105	290 aa	Predicted RBP	5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	PRKCE	Q02156	737 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	NCBP1	Q09161	790 aa	Known RBP	5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	FCHO2	Q0JRZ9	810 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	LMAN2	Q12907	356 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	SEMA3B	Q13214	749 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	HNRNPD	Q14103	355 aa	Known RBP	5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	HSP90AA2P	Q14568	343 aa	Predicted RBP	5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	KARS	Q15046	597 aa	Known RBP	5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	TCEAL1	Q15170	157 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	PSMD5	Q16401	504 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	XKR3	Q5GH77	459 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	CYP4A22	Q5TCH4	519 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	FAM171A1	Q5VUB5	890 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	EEF1DP3	Q658K8	133 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	LARP1B	Q659C4	914 aa	Known RBP	5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	KIAA1211L	Q6NV74	962 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	CWC27	Q6UX04	472 aa	Known RBP	5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	CCNI2	Q6ZMN8	369 aa	Predicted RBP	5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	C11orf74	Q86VG3	221 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	CEP57	Q86XR8	500 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	EXOC8	Q8IYI6	725 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	HACE1	Q8IYU2	909 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	ZNF654	Q8IZM8	581 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	ADGRG2	Q8IZP9	1017 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	CARF	Q8N187	725 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	CHCHD4	Q8N4Q1	142 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	NETO2	Q8NC67	525 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	RBBP8NL	Q8NC74	664 aa	Predicted RBP	5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	ZNF461	Q8TAF7	563 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	RILPL2	Q969X0	211 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	TCEAL4	Q96EI5	215 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	CCDC51	Q96ER9	411 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	ANO3	Q9BYT9	981 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	NOL6	Q9H6R4	1146 aa	Known RBP	5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	DKK4	Q9UBT3	224 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	TCEAL9	Q9UHQ7	104 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	EVL	Q9UI08	416 aa	Predicted RBP	5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	NUDT5	Q9UKK9	219 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	RAI2	Q9Y5P3	530 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	BACE2	Q9Y5Z0	518 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	PTPN13	Q12923	2485 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	ABCA7	Q8IZY2	2146 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	COL4A3	Q01955	1670 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	GREB1	Q4ZG55	1949 aa		5.21	□□□□□ -1.58
SCFD1-223	ENST00000557076	NOTCH4	Q99466	2003 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076		A0A087WV48	116 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076		A0A1B0GTL3	188 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	CCDC194	A0A1B0GVG4	234 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	SMCO2	A6NFE2	343 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	CAPN8	A6NHC0	703 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	MOSPD3	O75425	235 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	C1QL1	O75973	258 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	ABLIM3	O94929	683 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	PLEKHA8P1	O95397	391 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	TP53	P04637	393 aa	Predicted RBP	5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	SRGAP2C	P0DJJ0	459 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	CALM1	P0DP23	149 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	CALM2	P0DP24	149 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	CALM3	P0DP25	149 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	GUCY2C	P25092	1073 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	SFN	P31947	248 aa		5.2	□□□□□ -1.58

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