RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 ATP13A2Q9NQ11 1180 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 PNPLA3Q9NST1 481 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 KLQ9UEF7 1012 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 MAFFQ9ULX9 164 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 ZNF652Q9Y2D9 606 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 ST14Q9Y5Y6 855 aa14.27□□□□□ -0.12
SHMT2-226ENST00000556825 GCATO75600 419 aa14.27□□□□□ -0.13
SHMT2-226ENST00000556825 MAGEA4P43358 317 aa14.27□□□□□ -0.13
SHMT2-226ENST00000556825 KCNJ1P48048 391 aa14.27□□□□□ -0.13
SHMT2-226ENST00000556825 GALCP54803 685 aa14.27□□□□□ -0.13
SHMT2-226ENST00000556825 SMARCB1Q12824 385 aa14.27□□□□□ -0.13
SHMT2-226ENST00000556825 PERM1Q5SV97 790 aa14.27□□□□□ -0.13
SHMT2-226ENST00000556825 FAM205BPQ63HN1 556 aa14.27□□□□□ -0.13
SHMT2-226ENST00000556825 C4orf32Q8N8J7 132 aa14.27□□□□□ -0.13
SHMT2-226ENST00000556825 C7orf57Q8NEG2 295 aa14.27□□□□□ -0.13
SHMT2-226ENST00000556825 RFFLQ8WZ73 363 aa14.27□□□□□ -0.13
SHMT2-226ENST00000556825 FEM1CQ96JP0 617 aa14.27□□□□□ -0.13
SHMT2-226ENST00000556825 POP1Q99575 1024 aaKnown RBP14.27□□□□□ -0.13
SHMT2-226ENST00000556825 NUDT12Q9BQG2 462 aa14.27□□□□□ -0.13
SHMT2-226ENST00000556825 GIMAP4Q9NUV9 329 aa14.27□□□□□ -0.13
SHMT2-226ENST00000556825 OLAHQ9NV23 265 aa14.27□□□□□ -0.13
SHMT2-226ENST00000556825 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.27□□□□□ -0.13
SHMT2-226ENST00000556825 SUCOQ9UBS9 1254 aaKnown RBP14.27□□□□□ -0.13
SHMT2-226ENST00000556825 CNOT11Q9UKZ1 510 aaKnown RBP14.27□□□□□ -0.13
SHMT2-226ENST00000556825 PCDHGB3Q9Y5G1 929 aa14.27□□□□□ -0.13
SHMT2-226ENST00000556825 SCN11AQ9UI33 1791 aa14.27□□□□□ -0.13
SHMT2-226ENST00000556825 SPEF2Q9C093 1822 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 MEI4A8MW99 385 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 SNPHO15079 494 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 SHOXO15266 292 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 PRLP01236 227 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 ATP5BP06576 529 aaKnown RBP14.26□□□□□ -0.13
SHMT2-226ENST00000556825 EIF2AK2P19525 551 aaKnown RBP14.26□□□□□ -0.13
SHMT2-226ENST00000556825 ITIH1P19827 911 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 SLC26A3P40879 764 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 POLD2P49005 469 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 ITGA8P53708 1063 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 COPZ1P61923 177 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 DSC3Q14574 896 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 POU6F1Q14863 301 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 HAUS6Q7Z4H7 955 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 DSG4Q86SJ6 1040 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 ZNF354CQ86Y25 554 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 TRIM56Q9BRZ2 755 aaKnown RBP14.26□□□□□ -0.13
SHMT2-226ENST00000556825 MXD3Q9BW11 206 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 EMILIN2Q9BXX0 1053 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 PUS7LQ9H0K6 701 aaKnown RBP14.26□□□□□ -0.13
SHMT2-226ENST00000556825 PLEKHA5Q9HAU0 1116 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 DCAF16Q9NXF7 216 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 CDH22Q9UJ99 828 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 MIF4GDA9UHW6 222 aaKnown RBP14.26□□□□□ -0.13
SHMT2-226ENST00000556825 POC1B-GALNT4F8VUJ3 575 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 TM9SF1O15321 606 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 GPAA1O43292 621 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 ASNA1O43681 348 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 CLPXO76031 633 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 SORBS2O94875 1100 aaKnown RBP14.26□□□□□ -0.13
SHMT2-226ENST00000556825 CDH1P12830 882 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 GYS1P13807 737 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 IVDP26440 423 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 NAMPTP43490 491 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 PHKA1P46020 1223 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 KCNA1Q09470 495 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 TRAF2Q12933 501 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 RALGPS1Q5JS13 557 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 METTL2BQ6P1Q9 378 aaKnown RBP14.26□□□□□ -0.13
SHMT2-226ENST00000556825 TMEM206Q9H813 350 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 WASH6PQ9NQA3 447 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 TMEM9Q9P0T7 183 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 ASIC3Q9UHC3 531 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 ANAPC5Q9UJX4 755 aa14.26□□□□□ -0.13
SHMT2-226ENST00000556825 ADAMTS7Q9UKP4 1686 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 IQANK1A0A1B0GTG1 560 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 A0A1W2PPM1 405 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 PRR5-ARHGAP8B1AHC4 643 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 MTSS1O43312 755 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 DYRK3O43781 588 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 SORBS3O60504 671 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 ECE1P42892 770 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 SLC9A3P48764 834 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 CDH15P55291 814 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 ARHGAP8P85298 464 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 KRT17Q04695 432 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 NFATC3Q12968 1075 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 ARHGAP44Q17R89 818 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 ABCB5Q2M3G0 1257 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 GPR107Q5VW38 600 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 SHEQ5VZ18 495 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 ZCCHC8Q6NZY4 707 aaKnown RBP14.25□□□□□ -0.13
SHMT2-226ENST00000556825 CARM1Q86X55 608 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 IFNL1Q8IU54 200 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 UBL4BQ8N7F7 174 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 BEND7Q8N7W2 519 aaPredicted RBP14.25□□□□□ -0.13
SHMT2-226ENST00000556825 AFG1LQ8WV93 481 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 C9orf72Q96LT7 481 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 PLIN2Q99541 437 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 IER2Q9BTL4 223 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 MKRN2Q9H000 416 aaKnown RBP14.25□□□□□ -0.13
SHMT2-226ENST00000556825 LRRC19Q9H756 370 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms