RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 CYTH4Q9UIA0 394 aa14.38□□□□□ -0.11
SHMT2-219ENST00000555563 LSM7Q9UK45 103 aaKnown RBP14.38□□□□□ -0.11
SHMT2-219ENST00000555563 LGALS16A8MUM7 142 aa14.37□□□□□ -0.11
SHMT2-219ENST00000555563 HMBSP08397 361 aa14.37□□□□□ -0.11
SHMT2-219ENST00000555563 UCHL3P15374 230 aa14.37□□□□□ -0.11
SHMT2-219ENST00000555563 RPL34P49207 117 aaKnown RBP14.37□□□□□ -0.11
SHMT2-219ENST00000555563 GALK1P51570 392 aa14.37□□□□□ -0.11
SHMT2-219ENST00000555563 COPB1P53618 953 aaKnown RBP14.37□□□□□ -0.11
SHMT2-219ENST00000555563 SATB1Q01826 763 aa14.37□□□□□ -0.11
SHMT2-219ENST00000555563 PTK2Q05397 1052 aa14.37□□□□□ -0.11
SHMT2-219ENST00000555563 DRAP1Q14919 205 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-219ENST00000555563 FKBP15Q5T1M5 1219 aa14.37□□□□□ -0.11
SHMT2-219ENST00000555563 SMYD5Q6GMV2 418 aa14.37□□□□□ -0.11
SHMT2-219ENST00000555563 PKN3Q6P5Z2 889 aa14.37□□□□□ -0.11
SHMT2-219ENST00000555563 TSSK4Q6SA08 328 aa14.37□□□□□ -0.11
SHMT2-219ENST00000555563 SLC47A2Q86VL8 602 aa14.37□□□□□ -0.11
SHMT2-219ENST00000555563 PASD1Q8IV76 773 aa14.37□□□□□ -0.11
SHMT2-219ENST00000555563 SYNPOQ8N3V7 929 aa14.37□□□□□ -0.11
SHMT2-219ENST00000555563 SPEM1Q8N4L4 309 aa14.37□□□□□ -0.11
SHMT2-219ENST00000555563 ANKRD20A12PQ8NF67 263 aa14.37□□□□□ -0.11
SHMT2-219ENST00000555563 IRGQQ8WZA9 623 aa14.37□□□□□ -0.11
SHMT2-219ENST00000555563 EXOC4Q96A65 974 aa14.37□□□□□ -0.11
SHMT2-219ENST00000555563 FUCA2Q9BTY2 467 aa14.37□□□□□ -0.11
SHMT2-219ENST00000555563 NAA15Q9BXJ9 866 aaKnown RBP14.37□□□□□ -0.11
SHMT2-219ENST00000555563 MIS12Q9H081 205 aa14.37□□□□□ -0.11
SHMT2-219ENST00000555563 NAT10Q9H0A0 1025 aaKnown RBP14.37□□□□□ -0.11
SHMT2-219ENST00000555563 GANQ9H2C0 597 aa14.37□□□□□ -0.11
SHMT2-219ENST00000555563 PLCB1Q9NQ66 1216 aa14.37□□□□□ -0.11
SHMT2-219ENST00000555563 LIMA1Q9UHB6 759 aaKnown RBP14.37□□□□□ -0.11
SHMT2-219ENST00000555563 FBXO4Q9UKT5 387 aa14.37□□□□□ -0.11
SHMT2-219ENST00000555563 STRIP2Q9ULQ0 834 aa14.37□□□□□ -0.11
SHMT2-219ENST00000555563 CFAP54Q96N23 3096 aa14.37□□□□□ -0.11
SHMT2-219ENST00000555563 CACNA1HO95180 2353 aa14.36□□□□□ -0.11
SHMT2-219ENST00000555563 CACNA1IQ9P0X4 2223 aa14.36□□□□□ -0.11
SHMT2-219ENST00000555563 SLC12A8A0AV02 714 aa14.36□□□□□ -0.11
SHMT2-219ENST00000555563 F8VZ95 297 aa14.36□□□□□ -0.11
SHMT2-219ENST00000555563 EPHB6O15197 1021 aa14.36□□□□□ -0.11
SHMT2-219ENST00000555563 HOXC11O43248 304 aaPredicted RBP14.36□□□□□ -0.11
SHMT2-219ENST00000555563 RNF40O75150 1001 aa14.36□□□□□ -0.11
SHMT2-219ENST00000555563 FBXO21O94952 628 aa14.36□□□□□ -0.11
SHMT2-219ENST00000555563 LTFP02788 710 aa14.36□□□□□ -0.11
SHMT2-219ENST00000555563 KLKB1P03952 638 aa14.36□□□□□ -0.11
SHMT2-219ENST00000555563 ATP1A3P13637 1013 aa14.36□□□□□ -0.11
SHMT2-219ENST00000555563 DRD1P21728 446 aa14.36□□□□□ -0.11
SHMT2-219ENST00000555563 CORO1AP31146 461 aaKnown RBP14.36□□□□□ -0.11
SHMT2-219ENST00000555563 CLCN1P35523 988 aa14.36□□□□□ -0.11
SHMT2-219ENST00000555563 NBL1P41271 181 aa14.36□□□□□ -0.11
SHMT2-219ENST00000555563 CCR3P51677 355 aa14.36□□□□□ -0.11
SHMT2-219ENST00000555563 COG7P83436 770 aa14.36□□□□□ -0.11
SHMT2-219ENST00000555563 CSTF1Q05048 431 aaKnown RBP14.36□□□□□ -0.11
SHMT2-219ENST00000555563 PDCLQ13371 301 aa14.36□□□□□ -0.11
SHMT2-219ENST00000555563 APTXQ7Z2E3 356 aaKnown RBP14.36□□□□□ -0.11
SHMT2-219ENST00000555563 DHX40Q8IX18 779 aaKnown RBP14.36□□□□□ -0.11
SHMT2-219ENST00000555563 RNF139Q8WU17 664 aa14.36□□□□□ -0.11
SHMT2-219ENST00000555563 BPIFA3Q9BQP9 254 aa14.36□□□□□ -0.11
SHMT2-219ENST00000555563 SLC4A5Q9BY07 1137 aa14.36□□□□□ -0.11
SHMT2-219ENST00000555563 SPHK2Q9NRA0 654 aa14.36□□□□□ -0.11
SHMT2-219ENST00000555563 FAM207AQ9NSI2 230 aaPredicted RBP14.36□□□□□ -0.11
SHMT2-219ENST00000555563 OLA1Q9NTK5 396 aaKnown RBP14.36□□□□□ -0.11
SHMT2-219ENST00000555563 C2orf42Q9NWW7 574 aa14.36□□□□□ -0.11
SHMT2-219ENST00000555563 PCDHGC3Q9UN70 934 aa14.36□□□□□ -0.11
SHMT2-219ENST00000555563 SYCE3A1L190 88 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 E5RJQ4 531 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 PROB1E7EW31 1015 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 MSI1O43347 362 aaKnown RBP14.35□□□□□ -0.11
SHMT2-219ENST00000555563 TDGF1P13385 188 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 EIF2DP41214 584 aaKnown RBP14.35□□□□□ -0.11
SHMT2-219ENST00000555563 ACADSBP45954 432 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 SLC6A11P48066 632 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 GAD2Q05329 585 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 KDSRQ06136 332 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 MESP2Q0VG99 397 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 SYCP1Q15431 976 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 ANO4Q32M45 955 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 ZNF528Q3MIS6 628 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 FBXO43Q4G163 708 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 MSANTD2Q6P1R3 559 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 MAMSTRQ6ZN01 415 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 TMEM25Q86YD3 366 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 FMNL3Q8IVF7 1028 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 SCUBE3Q8IX30 993 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 ETFBKMTQ8IXQ9 262 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 C1orf131Q8NDD1 294 aaKnown RBP14.35□□□□□ -0.11
SHMT2-219ENST00000555563 STK32AQ8WU08 396 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 PLD4Q96BZ4 506 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 ABCC13Q9NSE7 274 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 TJP2Q9UDY2 1190 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 SFMBT1Q9UHJ3 866 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 SIK3Q9Y2K2 1263 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 R4GN57 208 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 MYOFQ9NZM1 2061 aa14.35□□□□□ -0.11
SHMT2-219ENST00000555563 FANCMQ8IYD8 2048 aa14.34□□□□□ -0.11
SHMT2-219ENST00000555563 NEDD8-MDP1E9PL57 170 aa14.34□□□□□ -0.11
SHMT2-219ENST00000555563 PAPSS1O43252 624 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-219ENST00000555563 SART1O43290 800 aaKnown RBP14.34□□□□□ -0.11
SHMT2-219ENST00000555563 CYP11B1P15538 503 aa14.34□□□□□ -0.11
SHMT2-219ENST00000555563 PTMSP20962 102 aa14.34□□□□□ -0.11
SHMT2-219ENST00000555563 CDK11BP21127 795 aaKnown RBP14.34□□□□□ -0.11
SHMT2-219ENST00000555563 CXCL12P48061 93 aa14.34□□□□□ -0.11
SHMT2-219ENST00000555563 TPGS1Q6ZTW0 290 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms