RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 AMFRQ9UKV5 643 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 SNX12Q9UMY4 172 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 SYNJ2BP-COX16A0A087WUM0 186 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 I6L893 689 aaPredicted RBP11.25□□□□□ -0.61
TDP1-211ENST00000555178 LTFP02788 710 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 IL1R2P27930 398 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 SSR1P43307 286 aaKnown RBP11.25□□□□□ -0.61
TDP1-211ENST00000555178 ZNF143P52747 638 aaPredicted RBP11.25□□□□□ -0.61
TDP1-211ENST00000555178 EPHB3P54753 998 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 ZNF211Q13398 564 aaPredicted RBP11.25□□□□□ -0.61
TDP1-211ENST00000555178 SMTNL2Q2TAL5 461 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 DCAF6Q58WW2 860 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 PAPD7Q5XG87 772 aaKnown RBP11.25□□□□□ -0.61
TDP1-211ENST00000555178 GRASPQ7Z6J2 395 aaPredicted RBP11.25□□□□□ -0.61
TDP1-211ENST00000555178 LRRN4CLQ8ND94 238 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 CASP10Q92851 521 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 MS4A14Q96JA4 679 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 OSBPL9Q96SU4 736 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 TBCBQ99426 244 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 RNF38Q9H0F5 515 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 COX16Q9P0S2 106 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 SFMBT1Q9UHJ3 866 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 TRIOO75962 3097 aa11.25□□□□□ -0.61
TDP1-211ENST00000555178 KCNK3O14649 394 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 MSI1O43347 362 aaKnown RBP11.24□□□□□ -0.61
TDP1-211ENST00000555178 HSF2BPO75031 334 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 LRG1P02750 347 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 ZDHHC11BP0C7U3 371 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 MYL4P12829 197 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 YWHAZP63104 245 aaKnown RBP11.24□□□□□ -0.61
TDP1-211ENST00000555178 ZXDBP98169 803 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 ADAM15Q13444 863 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 RPS6KA1Q15418 735 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 CLUL1Q15846 466 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 KCNT1Q5JUK3 1230 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 RARS2Q5T160 578 aaKnown RBP11.24□□□□□ -0.61
TDP1-211ENST00000555178 TXNDC8Q6A555 127 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 CC2D1AQ6P1N0 951 aaPredicted RBP11.24□□□□□ -0.61
TDP1-211ENST00000555178 FAM172AQ8WUF8 416 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 MYRFLQ96LU7 910 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 SLC2A13Q96QE2 648 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 PEBP4Q96S96 227 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 CDX2Q99626 313 aaPredicted RBP11.24□□□□□ -0.61
TDP1-211ENST00000555178 PCSK1NQ9UHG2 260 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 A0A1W2PRU2 124 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 ZNF840PA6NDX5 716 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 SCAMP3O14828 347 aaKnown RBP11.24□□□□□ -0.61
TDP1-211ENST00000555178 DAB1O75553 588 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 FBXO21O94952 628 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 CSH1P0DML2 217 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 CSH2P0DML3 217 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 NCAM1P13591 858 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 GABRR2P28476 465 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 SNX16P57768 344 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 EFHC1Q5JVL4 640 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 EP400NLQ6ZTU2 488 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 CCDC149Q6ZUS6 474 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 NIPA2Q8N8Q9 360 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.24□□□□□ -0.61
TDP1-211ENST00000555178 ITFG1Q8TB96 612 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 FNIP1Q8TF40 1166 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 ING5Q8WYH8 240 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 SMG9Q9H0W8 520 aaKnown RBP11.24□□□□□ -0.61
TDP1-211ENST00000555178 PLEKHA4Q9H4M7 779 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 ZWILCHQ9H900 591 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 POPDC2Q9HBU9 364 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.24□□□□□ -0.61
TDP1-211ENST00000555178 MRFAP1Q9Y605 127 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 SAR1BQ9Y6B6 198 aa11.24□□□□□ -0.61
TDP1-211ENST00000555178 PDE2AO00408 941 aaPredicted RBP11.23□□□□□ -0.61
TDP1-211ENST00000555178 DPYSL4O14531 572 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 RTN3O95197 1032 aaPredicted RBP11.23□□□□□ -0.61
TDP1-211ENST00000555178 TUBB4AP04350 444 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 RHOP08100 348 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 RARGP13631 454 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 MIPP30301 263 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 SDC4P31431 198 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 MAN1A1P33908 653 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 CTNNA1P35221 906 aaKnown RBP11.23□□□□□ -0.61
TDP1-211ENST00000555178 MATKP42679 507 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 SULT1E1P49888 294 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 PEX5P50542 639 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 HDAC4P56524 1084 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 SLC25A11Q02978 314 aaKnown RBP11.23□□□□□ -0.61
TDP1-211ENST00000555178 PIGHQ14442 188 aaPredicted RBP11.23□□□□□ -0.61
TDP1-211ENST00000555178 CYP4V2Q6ZWL3 525 aaPredicted RBP11.23□□□□□ -0.61
TDP1-211ENST00000555178 ANKS1BQ7Z6G8 1248 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 TAC4Q86UU9 113 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 EFHBQ8N7U6 833 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 SHKBP1Q8TBC3 707 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 PPM1EQ8WY54 764 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 ZNF512Q96ME7 567 aaPredicted RBP11.23□□□□□ -0.61
TDP1-211ENST00000555178 ZSWIM3Q96MP5 696 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 NPY6RQ99463 290 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 CNPY3Q9BT09 278 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 DDX23Q9BUQ8 820 aaKnown RBP11.23□□□□□ -0.61
TDP1-211ENST00000555178 PRKD2Q9BZL6 878 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.23□□□□□ -0.61
TDP1-211ENST00000555178 DENND4AQ7Z401 1863 aa11.23□□□□□ -0.61
TDP1-211ENST00000555178 SCNN1AP37088 669 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms