RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 SIK3Q9Y2K2 1263 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 RABGAP1Q9Y3P9 1069 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 TECTAO75443 2155 aa4.28□□□□□ -1.72
LIMA1-208ENST00000551691 ATRNL1Q5VV63 1379 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 SPTBN2O15020 2390 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 GAKO14976 1311 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 ARAP2Q8WZ64 1704 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 PLXNA3P51805 1871 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 A0A0G2JNJ9 132 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 DYTNA2CJ06 578 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 PRR23AA6NEV1 266 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 GOLGA6L3A6NEY3 463 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 KBTBD13C9JR72 458 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 H3BQ06 376 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-208ENST00000551691 HNRNPDLO14979 420 aaKnown RBP4.27□□□□□ -1.73
LIMA1-208ENST00000551691 RASSF9O75901 435 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 MBD4O95243 580 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 LY86O95711 162 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 PGK1P00558 417 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 FGBP02675 491 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 CYP1A1P04798 512 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-208ENST00000551691 CA3P07451 260 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 DDCP20711 480 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 TNFAIP3P21580 790 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 IGHMBP2P38935 993 aaKnown RBP4.27□□□□□ -1.73
LIMA1-208ENST00000551691 GCLCP48506 637 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-208ENST00000551691 PIK3CGP48736 1102 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 SESN2P58004 480 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-208ENST00000551691 CD69Q07108 199 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 SLC13A2Q13183 592 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 ADAM9Q13443 819 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 RRP1BQ14684 758 aaKnown RBP4.27□□□□□ -1.73
LIMA1-208ENST00000551691 SEPT2Q15019 361 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 CDSNQ15517 529 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 ST3GAL2Q16842 350 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 PFKFB4Q16877 469 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 TIGD6Q17RP2 521 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 MPEG1Q2M385 716 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 SLC35G1Q2M3R5 365 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 MST1LQ2TV78 715 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 CR1LQ2VPA4 569 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 ADCK5Q3MIX3 580 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 C3orf38Q5JPI3 329 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 FAM47AQ5JRC9 791 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 PRR31Q5SQ13 230 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 PHF19Q5T6S3 580 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 MFSD14CQ5VZR4 134 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 LMBRD2Q68DH5 695 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-208ENST00000551691 ZNF585AQ6P3V2 769 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 BORAQ6PGQ7 559 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 DGLUCYQ7Z3D6 616 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 ZNF804AQ7Z570 1209 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 PLEKHH3Q7Z736 793 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 FAM124AQ86V42 546 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 SESTD1Q86VW0 696 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 UNC5BQ8IZJ1 945 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 SDR16C5Q8N3Y7 309 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 STPG3Q8N7X2 389 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 GPRC5AQ8NFJ5 357 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 TDRD7Q8NHU6 1098 aaKnown RBP4.27□□□□□ -1.73
LIMA1-208ENST00000551691 GCDHQ92947 438 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-208ENST00000551691 USP13Q92995 863 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-208ENST00000551691 DVL3Q92997 716 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-208ENST00000551691 GFM2Q969S9 779 aaKnown RBP4.27□□□□□ -1.73
LIMA1-208ENST00000551691 LRRC46Q96FV0 321 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 FAM84BQ96KN1 310 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-208ENST00000551691 SNX22Q96L94 193 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 MPHOSPH8Q99549 860 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 FDXACB1Q9BRP7 624 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-208ENST00000551691 LDAHQ9H6V9 325 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 UBE2ZQ9H832 354 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-208ENST00000551691 BCO1Q9HAY6 547 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 PCDH18Q9HCL0 1135 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 CWC25Q9NXE8 425 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-208ENST00000551691 MOCS1Q9NZB8 636 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 HSPBP1Q9NZL4 362 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 PPP4R1LQ9P1A2 415 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 MORF4L1Q9UBU8 362 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 ZNF212Q9UDV6 495 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 Q9UFV3 132 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 AJAP1Q9UKB5 411 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-208ENST00000551691 CROTQ9UKG9 612 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 WASF3Q9UPY6 502 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 RUVBL1Q9Y265 456 aaKnown RBP4.27□□□□□ -1.73
LIMA1-208ENST00000551691 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.27□□□□□ -1.73
LIMA1-208ENST00000551691 CACNA1HO95180 2353 aa4.27□□□□□ -1.73
LIMA1-208ENST00000551691 UMODL1Q5DID0 1318 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 SMCHD1A6NHR9 2005 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 FRMPD3Q5JV73 1810 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 TMEM221A6NGB7 291 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 J3KRW8 73 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 M0R296 226 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 MYO1FO00160 1098 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 EIF3FO00303 357 aaPredicted RBP4.26□□□□□ -1.73
LIMA1-208ENST00000551691 NCAM2O15394 837 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 SLPIP03973 132 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 CD1AP06126 327 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 IGKV5-2P06315 115 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 ANXA2P07355 339 aaKnown RBP4.26□□□□□ -1.73
LIMA1-208ENST00000551691 LDHCP07864 332 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms