RNA–Protein interactions for RNA: ENST00000548771.1

CCDC38-206, Transcript of coiled-coil domain containing 38, humanhuman

TSL 3

Gene CCDC38, Length 470 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC38-206ENST00000548771 HIC2Q96JB3 615 aa4.82□□□□□ -1.64
CCDC38-206ENST00000548771 HIST1H2AAQ96QV6 131 aa4.82□□□□□ -1.64
CCDC38-206ENST00000548771 GATA5Q9BWX5 397 aaPredicted RBP4.82□□□□□ -1.64
CCDC38-206ENST00000548771 DNAJB11Q9UBS4 358 aa4.82□□□□□ -1.64
CCDC38-206ENST00000548771 HDAC9Q9UKV0 1011 aa4.82□□□□□ -1.64
CCDC38-206ENST00000548771 MYMKA6NI61 221 aa4.81□□□□□ -1.64
CCDC38-206ENST00000548771 C16orf96A6NNT2 1141 aa4.81□□□□□ -1.64
CCDC38-206ENST00000548771 GOLIM4O00461 696 aa4.81□□□□□ -1.64
CCDC38-206ENST00000548771 RNF8O76064 485 aa4.81□□□□□ -1.64
CCDC38-206ENST00000548771 TOMM40O96008 361 aa4.81□□□□□ -1.64
CCDC38-206ENST00000548771 MT-ND5P03915 603 aa4.81□□□□□ -1.64
CCDC38-206ENST00000548771 YPEL5P62699 121 aa4.81□□□□□ -1.64
CCDC38-206ENST00000548771 STK3Q13188 491 aa4.81□□□□□ -1.64
CCDC38-206ENST00000548771 KCNAB1Q14722 419 aa4.81□□□□□ -1.64
CCDC38-206ENST00000548771 PPP2R5AQ15172 486 aa4.81□□□□□ -1.64
CCDC38-206ENST00000548771 LCE1EQ5T753 118 aa4.81□□□□□ -1.64
CCDC38-206ENST00000548771 MZT2AQ6P582 158 aa4.81□□□□□ -1.64
CCDC38-206ENST00000548771 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.81□□□□□ -1.64
CCDC38-206ENST00000548771 NSMCE1Q8WV22 266 aa4.81□□□□□ -1.64
CCDC38-206ENST00000548771 PRR11Q96HE9 360 aaPredicted RBP4.81□□□□□ -1.64
CCDC38-206ENST00000548771 HS6ST2Q96MM7 605 aa4.81□□□□□ -1.64
CCDC38-206ENST00000548771 ZNF287Q9HBT7 754 aa4.81□□□□□ -1.64
CCDC38-206ENST00000548771 AGO4Q9HCK5 861 aaKnown RBP4.81□□□□□ -1.64
CCDC38-206ENST00000548771 VPS45Q9NRW7 570 aa4.81□□□□□ -1.64
CCDC38-206ENST00000548771 MAFFQ9ULX9 164 aa4.81□□□□□ -1.64
CCDC38-206ENST00000548771 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.81□□□□□ -1.64
CCDC38-206ENST00000548771 FAM90A10PA6NDY2 464 aa4.8□□□□□ -1.64
CCDC38-206ENST00000548771 F8W8V4 182 aa4.8□□□□□ -1.64
CCDC38-206ENST00000548771 RRHO14718 337 aa4.8□□□□□ -1.64
CCDC38-206ENST00000548771 INMTO95050 263 aa4.8□□□□□ -1.64
CCDC38-206ENST00000548771 SNHG28P0DPA3 235 aa4.8□□□□□ -1.64
CCDC38-206ENST00000548771 CCKARP32238 428 aa4.8□□□□□ -1.64
CCDC38-206ENST00000548771 CARSP49589 748 aaKnown RBP4.8□□□□□ -1.64
CCDC38-206ENST00000548771 EIF4A1P60842 406 aaKnown RBP4.8□□□□□ -1.64
CCDC38-206ENST00000548771 FAM193AP78312 1265 aa4.8□□□□□ -1.64
CCDC38-206ENST00000548771 SEMA5AQ13591 1074 aa4.8□□□□□ -1.64
CCDC38-206ENST00000548771 GRM3Q14832 879 aa4.8□□□□□ -1.64
CCDC38-206ENST00000548771 ACOX1Q15067 660 aa4.8□□□□□ -1.64
CCDC38-206ENST00000548771 DARS2Q6PI48 645 aaKnown RBP4.8□□□□□ -1.64
CCDC38-206ENST00000548771 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.8□□□□□ -1.64
CCDC38-206ENST00000548771 NGDNQ8NEJ9 315 aaKnown RBP4.8□□□□□ -1.64
CCDC38-206ENST00000548771 ZNF548Q8NEK5 533 aaPredicted RBP4.8□□□□□ -1.64
CCDC38-206ENST00000548771 SUN3Q8TAQ9 357 aa4.8□□□□□ -1.64
CCDC38-206ENST00000548771 CAMK1GQ96NX5 476 aa4.8□□□□□ -1.64
CCDC38-206ENST00000548771 FOXP1Q9H334 677 aaPredicted RBP4.8□□□□□ -1.64
CCDC38-206ENST00000548771 AS3MTQ9HBK9 375 aa4.8□□□□□ -1.64
CCDC38-206ENST00000548771 ZNF580Q9UK33 172 aa4.8□□□□□ -1.64
CCDC38-206ENST00000548771 OGDHLQ9ULD0 1010 aa4.8□□□□□ -1.64
CCDC38-206ENST00000548771 EVPLQ92817 2033 aa4.8□□□□□ -1.64
CCDC38-206ENST00000548771 CD8B2A6NJW9 211 aa4.79□□□□□ -1.64
CCDC38-206ENST00000548771 CA12O43570 354 aa4.79□□□□□ -1.64
CCDC38-206ENST00000548771 TSPAN6O43657 245 aa4.79□□□□□ -1.64
CCDC38-206ENST00000548771 CBFA2T3O75081 653 aa4.79□□□□□ -1.64
CCDC38-206ENST00000548771 OAZ2O95190 189 aa4.79□□□□□ -1.64
CCDC38-206ENST00000548771 RPL17P18621 184 aaKnown RBP4.79□□□□□ -1.64
CCDC38-206ENST00000548771 TNFRSF1BP20333 461 aa4.79□□□□□ -1.64
CCDC38-206ENST00000548771 PEX2P28328 305 aa4.79□□□□□ -1.64
CCDC38-206ENST00000548771 KIAA0753Q2KHM9 967 aa4.79□□□□□ -1.64
CCDC38-206ENST00000548771 CLEC9AQ6UXN8 241 aa4.79□□□□□ -1.64
CCDC38-206ENST00000548771 C9orf47Q6ZRZ4 202 aa4.79□□□□□ -1.64
CCDC38-206ENST00000548771 CCDC149Q6ZUS6 474 aa4.79□□□□□ -1.64
CCDC38-206ENST00000548771 TFAP2DQ7Z6R9 452 aa4.79□□□□□ -1.64
CCDC38-206ENST00000548771 ARFGAP1Q8N6T3 406 aa4.79□□□□□ -1.64
CCDC38-206ENST00000548771 MBD3L2Q8NHZ7 208 aaPredicted RBP4.79□□□□□ -1.64
CCDC38-206ENST00000548771 BCAS4Q8TDM0 211 aa4.79□□□□□ -1.64
CCDC38-206ENST00000548771 SMCR8Q8TEV9 937 aaPredicted RBP4.79□□□□□ -1.64
CCDC38-206ENST00000548771 VPS50Q96JG6 964 aa4.79□□□□□ -1.64
CCDC38-206ENST00000548771 MARK4Q96L34 752 aa4.79□□□□□ -1.64
CCDC38-206ENST00000548771 SNX22Q96L94 193 aa4.79□□□□□ -1.64
CCDC38-206ENST00000548771 STRBPQ96SI9 672 aaKnown RBP4.79□□□□□ -1.64
CCDC38-206ENST00000548771 TRMOQ9BU70 441 aa4.79□□□□□ -1.64
CCDC38-206ENST00000548771 TM2D2Q9BX73 214 aa4.79□□□□□ -1.64
CCDC38-206ENST00000548771 USP29Q9HBJ7 922 aa4.79□□□□□ -1.64
CCDC38-206ENST00000548771 ITGB1BP2Q9UKP3 347 aa4.79□□□□□ -1.64
CCDC38-206ENST00000548771 HPSEQ9Y251 543 aa4.79□□□□□ -1.64
CCDC38-206ENST00000548771 LRP12Q9Y561 859 aa4.79□□□□□ -1.64
CCDC38-206ENST00000548771 NOTCH4Q99466 2003 aa4.79□□□□□ -1.64
CCDC38-206ENST00000548771 TTBK1Q5TCY1 1321 aaPredicted RBP4.78□□□□□ -1.64
CCDC38-206ENST00000548771 A0A087WZ62 844 aa4.78□□□□□ -1.64
CCDC38-206ENST00000548771 MAP4K4O95819 1239 aaPredicted RBP4.78□□□□□ -1.64
CCDC38-206ENST00000548771 CYP19A1P11511 503 aaPredicted RBP4.78□□□□□ -1.64
CCDC38-206ENST00000548771 RBL1P28749 1068 aa4.78□□□□□ -1.64
CCDC38-206ENST00000548771 TACR3P29371 465 aa4.78□□□□□ -1.64
CCDC38-206ENST00000548771 ME1P48163 572 aa4.78□□□□□ -1.64
CCDC38-206ENST00000548771 TXNL4AP83876 142 aaKnown RBP4.78□□□□□ -1.64
CCDC38-206ENST00000548771 MTX1Q13505 466 aa4.78□□□□□ -1.64
CCDC38-206ENST00000548771 KCNJ12Q14500 433 aa4.78□□□□□ -1.64
CCDC38-206ENST00000548771 FAM110CQ1W6H9 321 aa4.78□□□□□ -1.64
CCDC38-206ENST00000548771 AASDHQ4L235 1098 aaPredicted RBP4.78□□□□□ -1.64
CCDC38-206ENST00000548771 RUSC1-AS1Q66K80 236 aa4.78□□□□□ -1.64
CCDC38-206ENST00000548771 KRT28Q7Z3Y7 464 aa4.78□□□□□ -1.64
CCDC38-206ENST00000548771 ANKRD13BQ86YJ7 626 aa4.78□□□□□ -1.64
CCDC38-206ENST00000548771 SDR16C5Q8N3Y7 309 aa4.78□□□□□ -1.64
CCDC38-206ENST00000548771 FAM71DQ8N9W8 422 aa4.78□□□□□ -1.64
CCDC38-206ENST00000548771 MPLKIPQ8TAP9 179 aa4.78□□□□□ -1.64
CCDC38-206ENST00000548771 IPCEF1Q8WWN9 437 aaPredicted RBP4.78□□□□□ -1.64
CCDC38-206ENST00000548771 BTBD1Q9H0C5 482 aa4.78□□□□□ -1.64
CCDC38-206ENST00000548771 SAP30LQ9HAJ7 183 aa4.78□□□□□ -1.64
CCDC38-206ENST00000548771 RXFP3Q9NSD7 469 aa4.78□□□□□ -1.64
CCDC38-206ENST00000548771 ZBTB40Q9NUA8 1239 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms