RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 SMNDC1O75940 238 aaKnown RBP eCLIP5.69□□□□□ -1.5
LIMA1-203ENST00000547825 KRT37O76014 449 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 TJP3O95049 919 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 ATE1O95260 518 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 GSTA1P08263 222 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 GSTP1P09211 210 aaKnown RBP5.69□□□□□ -1.5
LIMA1-203ENST00000547825 ITIH2P19823 946 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 GSCP56915 257 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-203ENST00000547825 NCALDP61601 193 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 NFIAQ12857 509 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 LAMC2Q13753 1193 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 COG2Q14746 738 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 CCDC14Q49A88 953 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 FAXCQ5TGI0 409 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 DAB2IPQ5VWQ8 1189 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 C16orf87Q6PH81 154 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 LRRC55Q6ZSA7 311 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 PRPF39Q86UA1 669 aaKnown RBP5.69□□□□□ -1.5
LIMA1-203ENST00000547825 CCDC33Q8N5R6 958 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 RNF148Q8N7C7 305 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 POU5F2Q8N7G0 328 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 ATP8B4Q8TF62 1192 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 KLHL6Q8WZ60 621 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 NSL1Q96IY1 281 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 RMDN2Q96LZ7 410 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 PPP1R16BQ96T49 567 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 SENP7Q9BQF6 1050 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 EIF2AK1Q9BQI3 630 aaKnown RBP5.69□□□□□ -1.5
LIMA1-203ENST00000547825 DEFB129Q9H1M3 183 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 CLIC5Q9NZA1 410 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 DOCK3Q8IZD9 2030 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 MYH11P35749 1972 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 IGKV6D-41A0A0C4DH26 115 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 CLRN2A0PK11 232 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 TTC36A6NLP5 189 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 ZBTB5O15062 677 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 CRCPO75575 148 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 RASSF9O75901 435 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 DNAJC8O75937 253 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-203ENST00000547825 KRT36O76013 467 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 PGM3O95394 542 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 LCA5LO95447 670 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 SGPL1O95470 568 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 MYL2P10916 166 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 CYP11B2P19099 503 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 ECE1P42892 770 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 CDK17Q00537 523 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 IKBKEQ14164 716 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 CNGA2Q16280 664 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 ATG16L1Q676U5 607 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 GRAMD4Q6IC98 578 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 UTS2BQ765I0 119 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 ARHGAP22Q7Z5H3 698 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 NT5DC3Q86UY8 548 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 DNAAF3Q8N9W5 541 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 C3orf20Q8ND61 904 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 ZSWIM2Q8NEG5 633 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 NUDT8Q8WV74 236 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 CCT6BQ92526 530 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 EXOC2Q96KP1 924 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 CLUHP3Q96NS8 147 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 RUSC1Q9BVN2 902 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 OSBPL8Q9BZF1 889 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 TRPV6Q9H1D0 765 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 EPB41L4BQ9H329 900 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 C10orf88Q9H8K7 445 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 RNPEPL1Q9HAU8 725 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 MRPL47Q9HD33 250 aaKnown RBP5.69□□□□□ -1.5
LIMA1-203ENST00000547825 WARS2Q9UGM6 360 aaKnown RBP5.69□□□□□ -1.5
LIMA1-203ENST00000547825 SLC45A1Q9Y2W3 748 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 SCINQ9Y6U3 715 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 PTPRSQ13332 1948 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 MAGEA13PA6NCF6 341 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 PDXKO00764 312 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 HSPA4LO95757 839 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 GSTA2P09210 222 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 TMEM253P0C7T8 217 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 GHRP10912 638 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 ENO3P13929 434 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-203ENST00000547825 PSMA2P25787 234 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 PTENP60484 403 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 XRCC4Q13426 336 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 SLC12A1Q13621 1099 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 NBPF12Q5TAG4 269 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-203ENST00000547825 KIAA1211LQ6NV74 962 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 ANO5Q75V66 913 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 EXOC3L1Q86VI1 746 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 CATSPER3Q86XQ3 398 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 C7orf31Q8N865 590 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 DEPDC1BQ8WUY9 529 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 TMEM40Q8WWA1 233 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 ATG4CQ96DT6 458 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 CNBD2Q96M20 576 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 P2RX7Q99572 595 aaKnown RBP5.69□□□□□ -1.5
LIMA1-203ENST00000547825 MOV10L1Q9BXT6 1211 aaKnown RBP5.69□□□□□ -1.5
LIMA1-203ENST00000547825 MANSC1Q9H8J5 431 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 APPL1Q9UKG1 709 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 ARHGAP26Q9UNA1 814 aa5.69□□□□□ -1.5
LIMA1-203ENST00000547825 DDTLA6NHG4 134 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-203ENST00000547825 MED24O75448 989 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms