RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 BUB1O43683 1085 aa16.71■□□□□ 0.27
PRPF40A-212ENST00000545856 TLR5O60602 858 aa16.71■□□□□ 0.27
PRPF40A-212ENST00000545856 MOCS3O95396 460 aa16.71■□□□□ 0.27
PRPF40A-212ENST00000545856 OLFM2O95897 454 aa16.71■□□□□ 0.27
PRPF40A-212ENST00000545856 KRT7P08729 469 aa16.71■□□□□ 0.27
PRPF40A-212ENST00000545856 RARGP13631 454 aa16.71■□□□□ 0.27
PRPF40A-212ENST00000545856 WEE1P30291 646 aa16.71■□□□□ 0.27
PRPF40A-212ENST00000545856 RING1Q06587 406 aa16.71■□□□□ 0.27
PRPF40A-212ENST00000545856 IFRD2Q12894 506 aaPredicted RBP16.71■□□□□ 0.27
PRPF40A-212ENST00000545856 TAF5Q15542 800 aa16.71■□□□□ 0.27
PRPF40A-212ENST00000545856 CCDC14Q49A88 953 aa16.71■□□□□ 0.27
PRPF40A-212ENST00000545856 BRMS1LQ5PSV4 323 aa16.71■□□□□ 0.27
PRPF40A-212ENST00000545856 LLGL2Q6P1M3 1020 aa16.71■□□□□ 0.27
PRPF40A-212ENST00000545856 DENND4AQ7Z401 1863 aa16.71■□□□□ 0.27
PRPF40A-212ENST00000545856 PEX26Q7Z412 305 aa16.71■□□□□ 0.27
PRPF40A-212ENST00000545856 EMC1Q8N766 993 aa16.71■□□□□ 0.27
PRPF40A-212ENST00000545856 GPR152Q8TDT2 470 aa16.71■□□□□ 0.27
PRPF40A-212ENST00000545856 NTAN1Q96AB6 310 aa16.71■□□□□ 0.27
PRPF40A-212ENST00000545856 ZNF707Q96C28 371 aaPredicted RBP16.71■□□□□ 0.27
PRPF40A-212ENST00000545856 PABPC5Q96DU9 382 aaKnown RBP16.71■□□□□ 0.27
PRPF40A-212ENST00000545856 NMUR1Q9HB89 426 aa16.71■□□□□ 0.27
PRPF40A-212ENST00000545856 TFR2Q9UP52 801 aa16.71■□□□□ 0.27
PRPF40A-212ENST00000545856 ALG6Q9Y672 507 aa16.71■□□□□ 0.27
PRPF40A-212ENST00000545856 SOX1O00570 391 aaPredicted RBP16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 CCL16O15467 120 aa16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 SPOPO43791 374 aa16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 RFPL2O75678 378 aa16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 PALMO75781 387 aa16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 CSPG5O95196 566 aa16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 TRUB2O95900 331 aaKnown RBP16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 OAS1P00973 400 aaKnown RBP16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 GABRR2P28476 465 aa16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 ATP5C1P36542 298 aaKnown RBP16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 SULT1E1P49888 294 aa16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 RNASE9P60153 205 aaKnown RBP16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 GNG11P61952 73 aa16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 ZNF252P-AS1Q0IIN9 211 aa16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 EIF4EBP2Q13542 120 aaPredicted RBP16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 MESDQ14696 234 aa16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 PPP2R5DQ14738 602 aa16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 BOLA3Q53S33 107 aa16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 CES5AQ6NT32 575 aa16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 GPR149Q86SP6 731 aa16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 VSIG1Q86XK7 387 aa16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 RHOT1Q8IXI2 618 aa16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 UBL4BQ8N7F7 174 aa16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 DQX1Q8TE96 717 aaKnown RBP16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 FAM172AQ8WUF8 416 aa16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 TEKT4Q8WW24 435 aa16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 SMG7Q92540 1137 aaKnown RBP16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 NECTIN4Q96NY8 510 aa16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 PIDD1Q9HB75 910 aa16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 DNMT3LQ9UJW3 386 aa16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 TLR6Q9Y2C9 796 aa16.7■□□□□ 0.26
PRPF40A-212ENST00000545856 DOCK6Q96HP0 2047 aa16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 A0A0U1RQJ8 604 aa16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 MDM4O15151 490 aa16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 IRAK2O43187 625 aa16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 LRCH4O75427 683 aa16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 TADA3O75528 432 aa16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 GRAP2O75791 330 aa16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 GLP2RO95838 553 aa16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 RHOP08100 348 aa16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 CTNNA2P26232 953 aa16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 COG7P83436 770 aa16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 OGDHQ02218 1023 aa16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 SCAPQ12770 1279 aa16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 ARL13BQ3SXY8 428 aa16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 ZNF569Q5MCW4 686 aa16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 HFE2Q6ZVN8 426 aa16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 NT5DC3Q86UY8 548 aa16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 DDX42Q86XP3 938 aaKnown RBP eCLIP16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 ATRIPQ8WXE1 791 aa16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 CORO1BQ9BR76 489 aa16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 IRX2Q9BZI1 471 aaPredicted RBP16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 FAM204AQ9H8W3 233 aa16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 DDX56Q9NY93 547 aaKnown RBP16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 CHORDC1Q9UHD1 332 aaPredicted RBP16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 NAALADL1Q9UQQ1 740 aa16.69■□□□□ 0.26
PRPF40A-212ENST00000545856 M0QYT0 321 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 CES2O00748 559 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 PRPSAP2O60256 369 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 LATS1O95835 1130 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 ABL1P00519 1130 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 TCF3P15923 654 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 PRLRP16471 622 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 COMTP21964 271 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 CCR1P32246 355 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 CTNNA1P35221 906 aaKnown RBP16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 MTHFRP42898 656 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 CXCR3P49682 368 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 CDR1P51861 262 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 SLC7A9P82251 487 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 DEUP1Q05D60 604 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 ADGRE1Q14246 886 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 TRIP4Q15650 581 aaPredicted RBP16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 CLUL1Q15846 466 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 PRSS36Q5K4E3 855 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 MEI1Q5TIA1 1274 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms