RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 TREML1Q86YW5 311 aa14.24□□□□□ -0.13
VPS33A-208ENST00000543633 CDKL3Q8IVW4 592 aaPredicted RBP14.24□□□□□ -0.13
VPS33A-208ENST00000543633 ARID3BQ8IVW6 561 aaPredicted RBP14.24□□□□□ -0.13
VPS33A-208ENST00000543633 ARHGAP18Q8N392 663 aa14.24□□□□□ -0.13
VPS33A-208ENST00000543633 AFG1LQ8WV93 481 aa14.24□□□□□ -0.13
VPS33A-208ENST00000543633 UCMAQ8WVF2 138 aa14.24□□□□□ -0.13
VPS33A-208ENST00000543633 ACAP3Q96P50 834 aa14.24□□□□□ -0.13
VPS33A-208ENST00000543633 ETNK2Q9NVF9 386 aa14.24□□□□□ -0.13
VPS33A-208ENST00000543633 THAP1Q9NVV9 213 aa14.24□□□□□ -0.13
VPS33A-208ENST00000543633 IL1RAPL1Q9NZN1 696 aa14.24□□□□□ -0.13
VPS33A-208ENST00000543633 SCAF8Q9UPN6 1271 aaKnown RBP14.24□□□□□ -0.13
VPS33A-208ENST00000543633 IGKV6-21A0A0C4DH24 114 aa14.23□□□□□ -0.13
VPS33A-208ENST00000543633 ENO4A6NNW6 628 aa14.23□□□□□ -0.13
VPS33A-208ENST00000543633 APOL1O14791 398 aa14.23□□□□□ -0.13
VPS33A-208ENST00000543633 ZBED1O96006 694 aa14.23□□□□□ -0.13
VPS33A-208ENST00000543633 ENO1P06733 434 aaKnown RBP14.23□□□□□ -0.13
VPS33A-208ENST00000543633 CRABP2P29373 138 aa14.23□□□□□ -0.13
VPS33A-208ENST00000543633 GPD2P43304 727 aa14.23□□□□□ -0.13
VPS33A-208ENST00000543633 DSG1Q02413 1049 aa14.23□□□□□ -0.13
VPS33A-208ENST00000543633 LAMTOR4Q0VGL1 99 aa14.23□□□□□ -0.13
VPS33A-208ENST00000543633 NAB1Q13506 487 aa14.23□□□□□ -0.13
VPS33A-208ENST00000543633 STILQ15468 1287 aa14.23□□□□□ -0.13
VPS33A-208ENST00000543633 TAF5Q15542 800 aa14.23□□□□□ -0.13
VPS33A-208ENST00000543633 HSF5Q4G112 596 aaPredicted RBP14.23□□□□□ -0.13
VPS33A-208ENST00000543633 FAM102AQ5T9C2 384 aaPredicted RBP14.23□□□□□ -0.13
VPS33A-208ENST00000543633 NPNTQ6UXI9 565 aa14.23□□□□□ -0.13
VPS33A-208ENST00000543633 CATSPERGQ6ZRH7 1159 aa14.23□□□□□ -0.13
VPS33A-208ENST00000543633 ULK2Q8IYT8 1036 aa14.23□□□□□ -0.13
VPS33A-208ENST00000543633 PLD5Q8N7P1 536 aa14.23□□□□□ -0.13
VPS33A-208ENST00000543633 TMEM176AQ96HP8 235 aa14.23□□□□□ -0.13
VPS33A-208ENST00000543633 ZNF670Q9BS34 389 aa14.23□□□□□ -0.13
VPS33A-208ENST00000543633 XAB2Q9HCS7 855 aaKnown RBP14.23□□□□□ -0.13
VPS33A-208ENST00000543633 PICK1Q9NRD5 415 aa14.23□□□□□ -0.13
VPS33A-208ENST00000543633 NDE1Q9NXR1 346 aa14.23□□□□□ -0.13
VPS33A-208ENST00000543633 NXF1Q9UBU9 619 aaKnown RBP14.23□□□□□ -0.13
VPS33A-208ENST00000543633 KIAA1257Q9ULG3 409 aa14.23□□□□□ -0.13
VPS33A-208ENST00000543633 WDR90Q96KV7 1748 aa14.23□□□□□ -0.13
VPS33A-208ENST00000543633 SLC15A5A6NIM6 579 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 M0QYV0 167 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 ACKR2O00590 384 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 KCNN4O15554 427 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 SNUPNO95149 360 aaKnown RBP14.22□□□□□ -0.13
VPS33A-208ENST00000543633 GNAT1P11488 350 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 MYL4P12829 197 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 DESP17661 470 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 PTPRAP18433 802 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 CACNA2D1P54289 1103 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 RPL26P61254 145 aaKnown RBP14.22□□□□□ -0.13
VPS33A-208ENST00000543633 KRT81Q14533 505 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 AP1ARQ63HQ0 302 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 RIPOR1Q6ZS17 1223 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 TAB3Q8N5C8 712 aaPredicted RBP14.22□□□□□ -0.13
VPS33A-208ENST00000543633 PLAC1Q9HBJ0 212 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 ARMCX1Q9P291 453 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 SIX4Q9UIU6 781 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 HACL1Q9UJ83 578 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 SOX13Q9UN79 622 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 SDR42E2A6NKP2 422 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 CXorf49A8MYA2 514 aaPredicted RBP14.22□□□□□ -0.13
VPS33A-208ENST00000543633 MDM4O15151 490 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 ITGBL1O95965 494 aaPredicted RBP14.22□□□□□ -0.13
VPS33A-208ENST00000543633 TGFB3P10600 412 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 AMPD1P23109 780 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 EDNRBP24530 442 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 SARNPP82979 210 aaKnown RBP14.22□□□□□ -0.13
VPS33A-208ENST00000543633 XIAPP98170 497 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 MMRN1Q13201 1228 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 STX3Q13277 289 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 HNRNPDQ14103 355 aaKnown RBP14.22□□□□□ -0.13
VPS33A-208ENST00000543633 ATF7IP2Q5U623 682 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 STKLD1Q8NE28 680 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 TRPM4Q8TD43 1214 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 DTX3LQ8TDB6 740 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 SEPT1Q8WYJ6 367 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 JADE3Q92613 823 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 PANX3Q96QZ0 392 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 EBNA1BP2Q99848 306 aaKnown RBP14.22□□□□□ -0.13
VPS33A-208ENST00000543633 ELOVL4Q9GZR5 314 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 VCX3BQ9H321 246 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 FZD8Q9H461 694 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 RPF1Q9H9Y2 349 aaKnown RBP14.22□□□□□ -0.13
VPS33A-208ENST00000543633 ZDHHC7Q9NXF8 308 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 C2CD2Q9Y426 696 aa14.22□□□□□ -0.13
VPS33A-208ENST00000543633 C2orf71A6NGG8 1288 aa14.21□□□□□ -0.13
VPS33A-208ENST00000543633 GCATO75600 419 aa14.21□□□□□ -0.13
VPS33A-208ENST00000543633 KLHL2O95198 593 aa14.21□□□□□ -0.13
VPS33A-208ENST00000543633 STAU1O95793 577 aaKnown RBP14.21□□□□□ -0.13
VPS33A-208ENST00000543633 AQP5P55064 265 aa14.21□□□□□ -0.13
VPS33A-208ENST00000543633 BCAR1P56945 870 aa14.21□□□□□ -0.13
VPS33A-208ENST00000543633 INCA1Q0VD86 236 aa14.21□□□□□ -0.13
VPS33A-208ENST00000543633 STEAP4Q687X5 459 aa14.21□□□□□ -0.13
VPS33A-208ENST00000543633 METTL7BQ6UX53 244 aa14.21□□□□□ -0.13
VPS33A-208ENST00000543633 UNC5AQ6ZN44 842 aa14.21□□□□□ -0.13
VPS33A-208ENST00000543633 MARK2Q7KZI7 788 aaKnown RBP14.21□□□□□ -0.13
VPS33A-208ENST00000543633 WDR75Q8IWA0 830 aaKnown RBP14.21□□□□□ -0.13
VPS33A-208ENST00000543633 KBTBD2Q8IY47 623 aa14.21□□□□□ -0.13
VPS33A-208ENST00000543633 RNF149Q8NC42 400 aa14.21□□□□□ -0.13
VPS33A-208ENST00000543633 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.21□□□□□ -0.13
VPS33A-208ENST00000543633 RXFP2Q8WXD0 754 aa14.21□□□□□ -0.13
VPS33A-208ENST00000543633 PPP2R3CQ969Q6 453 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms