RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	FAM71D	Q8N9W8	422 aa		4.65	□□□□□ -1.67
PRKDC-210	ENST00000541488	NGDN	Q8NEJ9	315 aa	Known RBP	4.65	□□□□□ -1.67
PRKDC-210	ENST00000541488	C16orf52	Q8NHV5	167 aa		4.65	□□□□□ -1.67
PRKDC-210	ENST00000541488	IPCEF1	Q8WWN9	437 aa	Predicted RBP	4.65	□□□□□ -1.67
PRKDC-210	ENST00000541488	SIGLEC11	Q96RL6	698 aa		4.65	□□□□□ -1.67
PRKDC-210	ENST00000541488	SCNM1	Q9BWG6	230 aa		4.65	□□□□□ -1.67
PRKDC-210	ENST00000541488	SAP30L	Q9HAJ7	183 aa		4.65	□□□□□ -1.67
PRKDC-210	ENST00000541488	VPS51	Q9UID3	782 aa		4.65	□□□□□ -1.67
PRKDC-210	ENST00000541488	PCDHB2	Q9Y5E7	798 aa		4.65	□□□□□ -1.67
PRKDC-210	ENST00000541488		H3BNC9	293 aa		4.64	□□□□□ -1.67
PRKDC-210	ENST00000541488	KCNAB3	O43448	404 aa		4.64	□□□□□ -1.67
PRKDC-210	ENST00000541488	INMT	O95050	263 aa		4.64	□□□□□ -1.67
PRKDC-210	ENST00000541488	GALNS	P34059	522 aa		4.64	□□□□□ -1.67
PRKDC-210	ENST00000541488	POLG	P54098	1239 aa	Predicted RBP	4.64	□□□□□ -1.67
PRKDC-210	ENST00000541488	ID2	Q02363	134 aa		4.64	□□□□□ -1.67
PRKDC-210	ENST00000541488	GBX1	Q14549	363 aa		4.64	□□□□□ -1.67
PRKDC-210	ENST00000541488	ST3GAL2	Q16842	350 aa		4.64	□□□□□ -1.67
PRKDC-210	ENST00000541488	PFKFB3	Q16875	520 aa	Predicted RBP	4.64	□□□□□ -1.67
PRKDC-210	ENST00000541488	C10orf25	Q5T742	122 aa		4.64	□□□□□ -1.67
PRKDC-210	ENST00000541488	CRELD2	Q6UXH1	353 aa	Predicted RBP	4.64	□□□□□ -1.67
PRKDC-210	ENST00000541488	PNPLA1	Q8N8W4	532 aa		4.64	□□□□□ -1.67
PRKDC-210	ENST00000541488	ZNF548	Q8NEK5	533 aa	Predicted RBP	4.64	□□□□□ -1.67
PRKDC-210	ENST00000541488	ZNF398	Q8TD17	642 aa		4.64	□□□□□ -1.67
PRKDC-210	ENST00000541488	ZNF668	Q96K58	619 aa	Predicted RBP	4.64	□□□□□ -1.67
PRKDC-210	ENST00000541488	ADGRE3	Q9BY15	652 aa		4.64	□□□□□ -1.67
PRKDC-210	ENST00000541488	SLC25A32	Q9H2D1	315 aa		4.64	□□□□□ -1.67
PRKDC-210	ENST00000541488	VPS45	Q9NRW7	570 aa		4.64	□□□□□ -1.67
PRKDC-210	ENST00000541488	GJB4	Q9NTQ9	266 aa		4.64	□□□□□ -1.67
PRKDC-210	ENST00000541488	ARL8B	Q9NVJ2	186 aa		4.64	□□□□□ -1.67
PRKDC-210	ENST00000541488	FAM50B	Q9Y247	325 aa		4.64	□□□□□ -1.67
PRKDC-210	ENST00000541488	RHPN2P1	A8MT19	583 aa		4.63	□□□□□ -1.67
PRKDC-210	ENST00000541488		A8MVJ9	347 aa		4.63	□□□□□ -1.67
PRKDC-210	ENST00000541488	KPNA5	O15131	536 aa		4.63	□□□□□ -1.67
PRKDC-210	ENST00000541488	PQBP1	O60828	265 aa	Known RBP	4.63	□□□□□ -1.67
PRKDC-210	ENST00000541488	WDR47	O94967	919 aa		4.63	□□□□□ -1.67
PRKDC-210	ENST00000541488	ATIC	P31939	592 aa		4.63	□□□□□ -1.67
PRKDC-210	ENST00000541488	HTR7	P34969	479 aa		4.63	□□□□□ -1.67
PRKDC-210	ENST00000541488	CCDC15	Q0P6D6	951 aa		4.63	□□□□□ -1.67
PRKDC-210	ENST00000541488	FHL3	Q13643	280 aa		4.63	□□□□□ -1.67
PRKDC-210	ENST00000541488	C4orf46	Q504U0	113 aa		4.63	□□□□□ -1.67
PRKDC-210	ENST00000541488	KLHL22	Q53GT1	634 aa		4.63	□□□□□ -1.67
PRKDC-210	ENST00000541488	MRPL10	Q7Z7H8	261 aa	Known RBP	4.63	□□□□□ -1.67
PRKDC-210	ENST00000541488	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	4.63	□□□□□ -1.67
PRKDC-210	ENST00000541488	COQ8B	Q96D53	544 aa		4.63	□□□□□ -1.67
PRKDC-210	ENST00000541488	KAZALD1	Q96I82	304 aa		4.63	□□□□□ -1.67
PRKDC-210	ENST00000541488	WAC	Q9BTA9	647 aa		4.63	□□□□□ -1.67
PRKDC-210	ENST00000541488	NUAK2	Q9H093	628 aa		4.63	□□□□□ -1.67
PRKDC-210	ENST00000541488	FAM83D	Q9H4H8	585 aa		4.63	□□□□□ -1.67
PRKDC-210	ENST00000541488	TRIM36	Q9NQ86	728 aa		4.63	□□□□□ -1.67
PRKDC-210	ENST00000541488	HEYL	Q9NQ87	328 aa	Predicted RBP	4.63	□□□□□ -1.67
PRKDC-210	ENST00000541488	KLHL42	Q9P2K6	505 aa		4.63	□□□□□ -1.67
PRKDC-210	ENST00000541488	HEY2	Q9UBP5	337 aa		4.63	□□□□□ -1.67
PRKDC-210	ENST00000541488	FZD4	Q9ULV1	537 aa		4.63	□□□□□ -1.67
PRKDC-210	ENST00000541488	RRH	O14718	337 aa		4.62	□□□□□ -1.67
PRKDC-210	ENST00000541488	HRG	P04196	525 aa		4.62	□□□□□ -1.67
PRKDC-210	ENST00000541488	ANXA2	P07355	339 aa	Known RBP	4.62	□□□□□ -1.67
PRKDC-210	ENST00000541488	TACR3	P29371	465 aa		4.62	□□□□□ -1.67
PRKDC-210	ENST00000541488	PBX1	P40424	430 aa		4.62	□□□□□ -1.67
PRKDC-210	ENST00000541488	CPA2	P48052	419 aa		4.62	□□□□□ -1.67
PRKDC-210	ENST00000541488	JAK3	P52333	1124 aa		4.62	□□□□□ -1.67
PRKDC-210	ENST00000541488	COPA	P53621	1224 aa		4.62	□□□□□ -1.67
PRKDC-210	ENST00000541488	RAE1	P78406	368 aa	Known RBP	4.62	□□□□□ -1.67
PRKDC-210	ENST00000541488	HTRA4	P83105	476 aa	Predicted RBP	4.62	□□□□□ -1.67
PRKDC-210	ENST00000541488	BFSP2	Q13515	415 aa		4.62	□□□□□ -1.67
PRKDC-210	ENST00000541488	CRTC1	Q6UUV9	634 aa		4.62	□□□□□ -1.67
PRKDC-210	ENST00000541488	KRT73	Q86Y46	540 aa		4.62	□□□□□ -1.67
PRKDC-210	ENST00000541488	ANKRD13B	Q86YJ7	626 aa		4.62	□□□□□ -1.67
PRKDC-210	ENST00000541488	FMNL3	Q8IVF7	1028 aa		4.62	□□□□□ -1.67
PRKDC-210	ENST00000541488	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	4.62	□□□□□ -1.67
PRKDC-210	ENST00000541488	CCDC33	Q8N5R6	958 aa		4.62	□□□□□ -1.67
PRKDC-210	ENST00000541488	SELENOO	Q9BVL4	669 aa		4.62	□□□□□ -1.67
PRKDC-210	ENST00000541488	PNPLA8	Q9NP80	782 aa		4.62	□□□□□ -1.67
PRKDC-210	ENST00000541488	PRDM11	Q9NQV5	511 aa		4.62	□□□□□ -1.67
PRKDC-210	ENST00000541488	HEMK1	Q9Y5R4	338 aa	Predicted RBP	4.62	□□□□□ -1.67
PRKDC-210	ENST00000541488	SIRT4	Q9Y6E7	314 aa	Predicted RBP	4.62	□□□□□ -1.67
PRKDC-210	ENST00000541488	CNTNAP2	Q9UHC6	1331 aa		4.62	□□□□□ -1.67
PRKDC-210	ENST00000541488		A0A087WZ62	844 aa		4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488		H3BNX3	289 aa		4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	TRIM38	O00635	465 aa		4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	INPPL1	O15357	1258 aa		4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	MBP	P02686	304 aa	Predicted RBP	4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	TMIGD3	P0DMS9	266 aa	Predicted RBP	4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	DRD1	P21728	446 aa		4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	SCP2	P22307	547 aa		4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	PIK3CB	P42338	1070 aa		4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	VPS41	P49754	854 aa		4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	WDR5	P61964	334 aa	Known RBP	4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	CFHR1	Q03591	330 aa		4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	STIM1	Q13586	685 aa		4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	LAMB3	Q13751	1172 aa		4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	SLC9C1	Q4G0N8	1177 aa		4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	ANO7	Q6IWH7	933 aa		4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	MZT2A	Q6P582	158 aa		4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	TFAP2D	Q7Z6R9	452 aa		4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	PIGO	Q8TEQ8	1089 aa		4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	IQCD	Q96DY2	449 aa		4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	TRMT61A	Q96FX7	289 aa	Known RBP	4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	HIC2	Q96JB3	615 aa		4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	MSLNL	Q96KJ4	702 aa		4.61	□□□□□ -1.67
PRKDC-210	ENST00000541488	TMEM79	Q9BSE2	394 aa		4.61	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms